{"openapi":"3.1.0","info":{"title":"Gen-EpiX casedb","summary":"Genomic Epidemiology platform for disease X, casedb app","description":"The casedb app manages data of cases of a disease.","contact":{"name":"RIVM CIb IDS bioinformatics group","url":"https://github.com/RIVM-bioinformatics/gen-epix-api","email":"ids-bioinformatics@rivm.nl"},"license":{"name":"EUPL-1.2","identifier":"EUPL-1.2"},"version":"9.0.2"},"paths":{"/v1/identity_providers":{"get":{"tags":["auth"],"summary":"Identityprovider","description":"Get all public identity providers","operationId":"identity_providers__get_all","responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"items":{"$ref":"#/components/schemas/IdentityProvider"},"type":"array","title":"Response Identity Providers  Get All"}}}}}}},"/v1/invite_user":{"post":{"tags":["organization"],"summary":"Invite A User","description":"Represents a request to create and return a UserInvitation for a new user.\n\nThe invitation records a particular user key claim (e.g. email address),\norganization and initial role(s).\n\nA random unique token is added to the invitation, and to be provided to the\nnew user for consuming the invitation.","operationId":"invite_user","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/InviteUserRequestBody"}}},"required":true},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/UserInvitation"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}},"security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}]}},"/v1/invite_user/constraints":{"get":{"tags":["organization"],"summary":"The Constraints For Inviting A User","description":"Represents a request to retrieve the constraints for inviting a user, such as\nvalid roles and organizations.\n\nThis command is used to gather the necessary information for the user invitation process.","operationId":"invite_user__constraints","responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/UserInvitationConstraints"}}}}},"security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}]}},"/v1/user_registrations/{token}":{"post":{"tags":["organization"],"summary":"Register Inviteduser","description":"Represents a request to register the user represented by an existing UserInvitation.\n\nThe token must match\nthat of an existing UserInvitation. The newly registered user is assigned\nthe organization and roles from the invitation. The invitation is deleted.","operationId":"user_registrations__post_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"token","in":"path","required":true,"schema":{"type":"string","title":"Token"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/User"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organization_sets/{organization_set_id}/organizations":{"put":{"tags":["organization"],"summary":"Organizationset Organization","description":"Represents a request to update the association between an OrganizationSet and\nOrganizations.\n\nThis command manages the many-to-many relationship by creating or updating\nOrganizationSetMember associations between organization sets and\nindividual organizations.","operationId":"organization_sets__put__organizations","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"organization_set_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Organization Set Id"}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/OrganizationSetOrganizationUpdateAssociationRequestBody"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/OrganizationSetMember"},"title":"Response Organization Sets  Put  Organizations"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/data_collection_sets/{data_collection_set_id}/data_collections":{"put":{"tags":["organization"],"summary":"Datacollectionset Datacollection","description":"Represents a request to update the association between a DataCollectionSet and\nDataCollections.\n\nThis command manages the many-to-many relationship by creating or updating\nDataCollectionSetMember associations between data collection sets and\nindividual data collections.","operationId":"data_collection_sets__put__data_collections","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"data_collection_set_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Data Collection Set Id"}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/DataCollectionSetDataCollectionUpdateAssociationRequestBody"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/DataCollectionSetMember"},"title":"Response Data Collection Sets  Put  Data Collections"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/user_me":{"get":{"tags":["organization"],"summary":"Userme","description":"Represents an authenticated commondb user and their organization membership.\n\nThe user key is stored lower case for unique lookup. Inactive users retain\ntheir data but cannot perform operations that require authorization.","operationId":"user_me__get_one","responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/User"}}}}},"security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}]}},"/v1/user_me/permissions":{"get":{"tags":["organization"],"summary":"Userme Permissions","description":"Represents a request to retrieve the effective permissions of the executing user.","operationId":"user_me__retrieve_permissions","responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"items":{"$ref":"#/components/schemas/ApiPermission"},"type":"array","uniqueItems":true,"title":"Response User Me  Retrieve Permissions"}}}}},"security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}]}},"/v1/user/{user_id}/anonymize":{"post":{"tags":["organization"],"summary":"Anonymizeuser","description":"Represents a request to anonymize a target user according to GDPR requirements.\n\nThis removes the target user's name and replaces its key with the user ID (a random\nUUID), so that they can no longer be identified directly. Because the key is\naltered, the user will no longer be able to log in either.","operationId":"anonymize_user","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"user_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"User Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/update_user/{object_id}":{"put":{"tags":["organization"],"summary":"Updateuser","description":"Represents a request to update an existing User's status, roles, and organization membership.\n\nThe target user is identified by tgt_user_id. Any field set to None will\nleave that property unchanged. Roles cannot be set to an empty set.\nCache is invalidated after successful update.","operationId":"update_user","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"object_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Object Id"}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/UpdateUserRequestBody"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/User"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/update_user_own_organization":{"put":{"tags":["organization"],"summary":"Updateuserownorganizationcommand","description":"Represents a request to update the current user's Organization membership.\n\nThis command allows a user to change their own organization association.\nThe is_new_user flag indicates whether this is part of a new user\nregistration process.","operationId":"update_user_own_organization","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/UpdateUserOwnOrganizationRequestBody"}}},"required":true},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/User"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}},"security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}]}},"/v1/organizations/{organization_id}/identifier_issuers":{"put":{"tags":["organization"],"summary":"Update Association Between Organization And Identifierissuer","description":"Represents a request to update the association between an Organization and\nIdentifierIssuers.","operationId":"organizations__put__identifier_issuers","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"organization_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Organization Id"}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/OrganizationIdentifierIssuerUpdateAssociationRequestBody"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/OrganizationIdentifierIssuerLink"},"title":"Response Organizations  Put  Identifier Issuers"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/retrieve/organization_contacts":{"post":{"tags":["organization"],"summary":"Retrieve Organization Contacts","description":"Represents a request to retrieve Contacts associated with organizations, sites, or specific contacts.\n\nExactly one of organization_ids, site_ids, or contact_ids must be provided.\nReturns a list of contacts with their associated site and organization data\ncascaded.","operationId":"retrieve__organization_contacts","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/RetrieveOrganizationContactsRequestBody"}}},"required":true},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/OrganizationContacts"}}}},"422":{"description":"Validation 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Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Response Organizations  Get All"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"delete":{"tags":["organization"],"summary":"Organizations  Delete All","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__delete_all","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"limit","in":"query","required":false,"schema":{"title":"Limit","type":"integer","nullable":true}},{"name":"offset","in":"query","required":false,"schema":{"title":"Offset","type":"integer","nullable":true}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"post":{"tags":["organization"],"summary":"Organizations  Post One","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__post_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/Organization"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/Organization"}}}},"422":{"description":"Validation 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Organizations.","operationId":"organizations__post_query","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"limit","in":"query","required":false,"schema":{"title":"Limit","type":"integer","nullable":true}},{"name":"offset","in":"query","required":false,"schema":{"title":"Offset","type":"integer","nullable":true}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"anyOf":[{"$ref":"#/components/schemas/ExistsFilter"},{"$ref":"#/components/schemas/EqualsBooleanFilter"},{"$ref":"#/components/schemas/EqualsNumberFilter"},{"$ref":"#/components/schemas/EqualsStringFilter"},{"$ref":"#/components/schemas/EqualsUuidFilter"},{"$ref":"#/components/schemas/NumberRangeFilter"},{"$ref":"#/components/schemas/DateRangeFilter"},{"$ref":"#/components/schemas/DatetimeRangeFilter"},{"$ref":"#/components/schemas/PartialDateRangeFilter"},{"$ref":"#/components/schemas/RegexFilter"},{"$ref":"#/components/schemas/NumberSetFilter"},{"$ref":"#/components/schemas/StringSetFilter"},{"$ref":"#/components/schemas/UuidSetFilter"},{"$ref":"#/components/schemas/NoFilter"},{"$ref":"#/components/schemas/CompositeFilter"}],"title":"Filter"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Response Organizations  Post Query"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organizations/query/ids":{"post":{"tags":["organization"],"summary":"Organizations  Post Query  Ids","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__post_query__ids","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"limit","in":"query","required":false,"schema":{"title":"Limit","type":"integer","nullable":true}},{"name":"offset","in":"query","required":false,"schema":{"title":"Offset","type":"integer","nullable":true}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"anyOf":[{"$ref":"#/components/schemas/ExistsFilter"},{"$ref":"#/components/schemas/EqualsBooleanFilter"},{"$ref":"#/components/schemas/EqualsNumberFilter"},{"$ref":"#/components/schemas/EqualsStringFilter"},{"$ref":"#/components/schemas/EqualsUuidFilter"},{"$ref":"#/components/schemas/NumberRangeFilter"},{"$ref":"#/components/schemas/DateRangeFilter"},{"$ref":"#/components/schemas/DatetimeRangeFilter"},{"$ref":"#/components/schemas/PartialDateRangeFilter"},{"$ref":"#/components/schemas/RegexFilter"},{"$ref":"#/components/schemas/NumberSetFilter"},{"$ref":"#/components/schemas/StringSetFilter"},{"$ref":"#/components/schemas/UuidSetFilter"},{"$ref":"#/components/schemas/NoFilter"},{"$ref":"#/components/schemas/CompositeFilter"}],"title":"Filter"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"type":"string","format":"uuid"},"title":"Response Organizations  Post Query  Ids"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organizations/batch":{"post":{"tags":["organization"],"summary":"Organizations  Post Some","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__post_some","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Create Objs"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Response Organizations  Post Some"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"get":{"tags":["organization"],"summary":"Organizations  Get Some","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__get_some","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"ids","in":"query","required":true,"schema":{"type":"string","title":"Ids"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Response Organizations  Get Some"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"put":{"tags":["organization"],"summary":"Organizations  Put Some","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__put_some","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Update Objs"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/Organization"},"title":"Response Organizations  Put Some"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"delete":{"tags":["organization"],"summary":"Organizations  Delete Some","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__delete_some","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"ids","in":"query","required":true,"schema":{"type":"string","title":"Ids"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"type":"string","format":"uuid"},"title":"Response Organizations  Delete Some"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organizations/{object_id}":{"get":{"tags":["organization"],"summary":"Organizations  Get One","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__get_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"object_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Object Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/Organization"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"put":{"tags":["organization"],"summary":"Organizations  Put One","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__put_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"object_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Object Id"}}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/Organization"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/Organization"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"delete":{"tags":["organization"],"summary":"Organizations  Delete One","description":"Represents a request to perform a CRUD operation on Organizations.","operationId":"organizations__delete_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"object_id","in":"path","required":true,"schema":{"type":"string","format":"uuid","title":"Object Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"string","format":"uuid","title":"Response Organizations  Delete One"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organization_sets":{"get":{"tags":["organization"],"summary":"Organization Sets  Get All","description":"Represents a request to perform a CRUD operation on OrganizationSets.","operationId":"organization_sets__get_all","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"limit","in":"query","required":false,"schema":{"title":"Limit","type":"integer","nullable":true}},{"name":"offset","in":"query","required":false,"schema":{"title":"Offset","type":"integer","nullable":true}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/OrganizationSet"},"title":"Response Organization Sets  Get All"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"delete":{"tags":["organization"],"summary":"Organization Sets  Delete All","description":"Represents a request to perform a CRUD operation on OrganizationSets.","operationId":"organization_sets__delete_all","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"parameters":[{"name":"limit","in":"query","required":false,"schema":{"title":"Limit","type":"integer","nullable":true}},{"name":"offset","in":"query","required":false,"schema":{"title":"Offset","type":"integer","nullable":true}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}},"post":{"tags":["organization"],"summary":"Organization Sets  Post One","description":"Represents a request to perform a CRUD operation on OrganizationSets.","operationId":"organization_sets__post_one","security":[{"https://pre-login.rivm.nl/broker/sp/oidc":["openid","profile"]},{"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":["openid","profile"]}],"requestBody":{"required":true,"content":{"application/json":{"schema":{"$ref":"#/components/schemas/OrganizationSet"}}}},"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/OrganizationSet"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/v1/organization_sets/query":{"post":{"tags":["organization"],"summary":"Organization Sets  Post Query","description":"Represents a request to perform a CRUD operation on 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None content values are allowed to support deletion of keys."}},"type":"object","required":["case_type_id","created_in_data_collection_id","content"],"title":"Case","description":"Represents an epidemiological case and its typed content."},"CaseBatchForUpload":{"properties":{"id":{"type":"string","format":"uuid","title":"Id","description":"Unique upload batch identifier, serialized as a string UUID."},"created_at":{"type":"string","format":"date-time","title":"Created At","description":"The UTC timestamp when the upload batch was created."},"cases":{"items":{"$ref":"#/components/schemas/CaseForUpload"},"type":"array","title":"Cases","description":"The cases to be uploaded."}},"type":"object","required":["cases"],"title":"CaseBatchForUpload","description":"Represents a batch of unique cases intended for upload.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseBatchForUpload:\nRepresents a batch ParentForUpload objects to be uploaded.\n\nThis is a base class intended to be subclassed per application.\n\nA batch is intended as a single unit of work for an upload operation and as such to be\nprocessed atomically.\n\nModel validation:\nParent and child IDs and external identifiers must be unique within the\nbatch. Intra-parent child links may not point to children of another parent.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance."},"CaseBatchUploadResult":{"properties":{"logs":{"items":{"$ref":"#/components/schemas/EtlLogItem"},"type":"array","title":"Logs","description":"Log items capturing messages and events that occurred during the operation."},"id":{"title":"Id","description":"The unique identifier for the specific object instance that this result pertains to, if applicable. E.g. the object that was created or updated as part of the upload.","type":"string","nullable":true},"status":{"$ref":"#/components/schemas/EtlStatus","description":"Upload status; successful states require no error logs and failed states require an error log.","default":"PENDING"},"is_new":{"type":"boolean","title":"Is New","description":"Indicates whether the object did not exist before start of the upload. False in case upload failed before this could be determined.","default":false},"batch_id":{"type":"string","format":"uuid","title":"Batch Id","description":"The unique identifier for the upload batch that this result belongs to."},"result_type":{"type":"string","title":"Result Type","description":"The concrete result class name, set automatically on validation. Used to reconstruct the correct subclass when deserialising a heterogeneous list of upload results.","default":""},"cases":{"items":{"$ref":"#/components/schemas/CaseUploadResult"},"type":"array","title":"Cases","description":"The results of uploading the cases."}},"type":"object","required":["cases"],"title":"CaseBatchUploadResult","description":"Represents the results of uploading a batch of cases.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseBatchUploadResult:\nRepresents the result for an atomic batch upload.\n\nSubclasses use field names that match their BaseBatchForUpload payload.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResult:\nRepresents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResult:\nRepresents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance."},"CaseClassification":{"type":"string","enum":["POSSIBLE","PROBABLE","CONFIRMED"],"title":"CaseClassification","description":"Classify the diagnostic certainty assigned to a case."},"CaseCohortLink":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The ID of the case."},"cohort_id":{"type":"string","format":"uuid","title":"Cohort Id","description":"The ID of the omopdb cohort linked to this case."},"cohort_definition_id":{"type":"string","format":"uuid","title":"Cohort Definition Id","description":"The ID of the omopdb cohort definition linked to this case."}},"type":"object","required":["case_id","cohort_id","cohort_definition_id"],"title":"CaseCohortLink","description":"Represents a non-persistable link from a case to an OMOP cohort."},"CaseDataCollectionLink":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The ID of the case. FOREIGN KEY"},"case":{"description":"The case","$ref":"#/components/schemas/Case","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true}},"type":"object","required":["case_id","data_collection_id"],"title":"CaseDataCollectionLink","description":"Represents a case membership link to a data collection."},"CaseDataIssue":{"properties":{"original_value":{"title":"Original Value","description":"The original value","type":"string","nullable":true},"updated_value":{"title":"Updated Value","description":"The new value after potential resolution of the issue. If not resolved, this will be None.","type":"string","nullable":true},"data_issue_type":{"$ref":"#/components/schemas/DataIssueType","description":"The type of validation issue"},"code":{"type":"string","title":"Code","description":"The code of the data issue"},"message":{"title":"Message","description":"The details of the data issue","type":"string","nullable":true},"col_id":{"type":"string","format":"uuid","title":"Col Id","description":"The ID of the column"}},"type":"object","required":["original_value","updated_value","data_issue_type","code","message","col_id"],"title":"CaseDataIssue","description":"Represents a case-content issue associated with a column."},"CaseForUpload":{"properties":{"identifiers":{"title":"Identifiers","description":"Optional identifiers with unique issuer IDs and codes; a code must map to one issuer ID.","items":{"$ref":"#/components/schemas/IdentifierForUpload"},"nullable":true},"id":{"title":"Id","description":"Parent identifier; NULL_ID becomes None and must match the contained parent and child parent IDs when provided.","type":"string","nullable":true},"case":{"description":"The case model itself, if to be created or updated as a whole.","$ref":"#/components/schemas/Case","nullable":true},"read_sets":{"title":"Read Sets","description":"The read sets to be uploaded and associated with the case. If None, this element is not taken into consideration during the upload. Must each be for a different Col.","items":{"$ref":"#/components/schemas/ReadSetForUpload"},"nullable":true},"seqs":{"title":"Seqs","description":"The sequences to be uploaded and associated with the case. If None, this element is not taken into consideration during the upload. Must each be for a different Col.","items":{"$ref":"#/components/schemas/SeqForUpload"},"nullable":true}},"type":"object","title":"CaseForUpload","description":"Represents a case upload with identifiers, read sets, and sequences.\n\nModel validation: Read sets and sequences must each use unique column IDs,\ncannot use the same column ID across both groups, and must map each alternate\nsample identifier consistently to one non-null sample ID. Violations raise\n``ValueError``. Validation inspects the child lists without mutating them.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nParentForUpload:\nRepresents a parent model and its linked child models for upload.\n\nThe term \"parent\" refers to a model that can have linked child models. Other identifiers\ncan also be added here, in the \"identifiers\" field.\n\nThis class must be subclassed for specific parent models, adding the following\nfields:\n- A parent Parent|None field where the parent model that needs to be uploaded, if\n  any, will be put\n- For each child model type that can be associated with the parent, a \"children\"\n  list|None field that will contain the actual child models to be uploaded along with\n  the parent model.\nMetadata on the parent and child models, allowing introspection, must be provided\nthrough the class variables.\n\nModel validation:\n- NULL_ID in the id field is converted to None.\n- If both the ParentForUpload id and the contained Parent model id are provided,\n  they must match.\n- For each child model type, if the ParentForUpload id is provided, the parent ID\n  field in each child model must either be None/NULL_ID or match the ParentForUpload\n  id.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nIdentifiersMixin:\nEncapsulates a mixin that adds identifiers fields and validation.\n\nAssumes that the inheriting model also has an 'identifiers' field.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nIdentifiersMixin:\nEncapsulates a mixin that adds identifiers fields and validation.\n\nAssumes that the inheriting model also has an 'identifiers' field.\n\n\n\nIdentifiersMixin:\nEncapsulates a mixin that adds identifiers fields and validation.\n\nAssumes that the inheriting model also has an 'identifiers' field."},"CaseIdentifier":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The ID of the identifier. Computed as the UUID of the first 16 bytes of the SHA-256 hash of the concatenated identifier_issuer_id bytes and the external_id encoded as UTF-8. PRIMARY KEY","type":"string","nullable":true},"identifier_issuer_id":{"type":"string","format":"uuid","title":"Identifier Issuer Id","description":"The UUID of the identifier issuer that issued the identifier"},"identifier_issuer":{"description":"The identifier issuer corresponding to the ID","$ref":"#/components/schemas/IdentifierIssuer","nullable":true},"external_id":{"type":"string","maxLength":255,"title":"External Id","description":"Issuer-provided identifier, normalized by stripping leading and trailing whitespace."},"internal_id":{"type":"string","format":"uuid","title":"Internal Id","description":"The internal identifier."},"case":{"description":"The case associated with this identifier.","$ref":"#/components/schemas/Case","nullable":true}},"type":"object","required":["identifier_issuer_id","external_id","internal_id"],"title":"CaseIdentifier","description":"Represents an external identifier associated with a case.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseIdentifier:\nRepresents an identifier generated outside the system for an entity.\n\nIt records an identifier issuer and the system's own\nidentifier.\n\nSubclasses bind ``MODEL_CLASS`` to the related domain model. The identifier\nUUID is deterministically derived from the issuer UUID and normalized\nexternal identifier, making each issuer/external-ID pair unique.\n\nModel validation:\nA missing ``id`` is derived deterministically from ``identifier_issuer_id``\nand ``external_id``; a supplied ID must match that derived value."},"CaseQuery":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"label":{"title":"Label","description":"The label for the query.","type":"string","nullable":true},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType that the cases must belong to."},"case_set_ids":{"title":"Case Set Ids","description":"The IDs of the case set(s) that the case must belong to. Not applied if not provided. All case sets must belong to the same CaseType as case_type_id.","items":{"type":"string","format":"uuid"},"nullable":true},"datetime_range_filter":{"description":"The datetime range filter to apply to the case date. Not applied if not provided.","$ref":"#/components/schemas/DatetimeRangeFilter","nullable":true},"filter":{"description":"The filter to apply. Not applied if not provided.","$ref":"#/components/schemas/CompositeFilter","nullable":true}},"type":"object","required":["case_type_id"],"title":"CaseQuery","description":"Represents criteria for querying cases of one case type."},"CaseQueryResult":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_query":{"$ref":"#/components/schemas/CaseQuery","description":"The case query that was executed, provided back."},"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","title":"Case Ids","description":"The IDs of the cases matching the query, possibly limited by CaseSettings.read_max_n_cases. If limited, the most recent cases according to CaseSettings.stats_time_dim_id are returned"},"is_max_results_exceeded":{"type":"boolean","title":"Is Max Results Exceeded","description":"Whether the number of results was limited."}},"type":"object","required":["case_query","case_ids","is_max_results_exceeded"],"title":"CaseQueryResult","description":"Represents the case identifiers returned for an executed query."},"CaseRights":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"created_in_data_collection_id":{"type":"string","format":"uuid","title":"Created In Data Collection Id","description":"The ID of the data collection where the item was created"},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType"},"data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Data Collection Ids","description":"The IDs of the data collections in which the item is currently shared, including the created_in_data_collection_id"},"is_full_access":{"type":"boolean","title":"Is Full Access","description":"Whether the user has full access to the item, i.e. all rights on all data collections"},"add_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Add Data Collection Ids","description":"The IDs of the data collections to which the item is allowed to be added"},"remove_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Remove Data Collection Ids","description":"The IDs of the data collections from which the item is allowed to be removed. If remove_data_collection_ids is equal to data_collection_ids, the item is allowed to be deleted"},"can_delete":{"type":"boolean","title":"Can Delete","description":"Whether the item can be deleted."},"shared_in_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Shared In Data Collection Ids","description":"The IDs of the data collections in which the item is currently shared, excluding the created_in_data_collection_id"},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The ID of the case"},"read_col_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Read Col Ids","description":"The IDs of the Cols that are allowed to be read for the case"},"write_col_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Write Col Ids","description":"The IDs of the Cols that are allowed to be written for the case"}},"type":"object","required":["created_in_data_collection_id","case_type_id","data_collection_ids","is_full_access","add_data_collection_ids","remove_data_collection_ids","can_delete","shared_in_data_collection_ids","case_id","read_col_ids","write_col_ids"],"title":"CaseRights","description":"Represents a user's rights to one case and its columns.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCaseRights:\nRepresents a user's data-collection rights for one case-domain item."},"CaseSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType. FOREIGN KEY"},"case_type":{"description":"The CaseType","$ref":"#/components/schemas/CaseType","nullable":true},"created_in_data_collection_id":{"type":"string","format":"uuid","title":"Created In Data Collection Id","description":"The ID of the data collection where the case set was created. FOREIGN KEY"},"created_in_data_collection":{"description":"The data collection where the case set was created","$ref":"#/components/schemas/DataCollection","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of a case set, UNIQUE"},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of a case set, UNIQUE"},"description":{"type":"string","title":"Description","description":"The description of a case set"},"case_set_date":{"type":"string","format":"date-time","title":"Case Set Date","description":"The datetime of the case set creation"},"case_set_category_id":{"type":"string","format":"uuid","title":"Case Set Category Id","description":"The CaseSetCategory ID. FOREIGN KEY"},"case_set_category":{"description":"The category of the case set","$ref":"#/components/schemas/CaseSetCategory","nullable":true},"case_set_status_id":{"type":"string","format":"uuid","title":"Case Set Status Id","description":"The CaseSetStatus ID. FOREIGN KEY"},"case_set_status":{"description":"The status of the case set","$ref":"#/components/schemas/CaseSetStatus","nullable":true}},"type":"object","required":["case_type_id","created_in_data_collection_id","name","code","description","case_set_category_id","case_set_status_id"],"title":"CaseSet","description":"Represents a named, typed collection of epidemiological cases."},"CaseSetCategory":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseSetCategory, UNIQUE"},"description":{"title":"Description","description":"The description of the CaseSetCategory","type":"string","nullable":true},"rank":{"type":"integer","title":"Rank","description":"The rank of the CaseSetCategory, for (partial) ordering.","default":0}},"type":"object","required":["name","description"],"title":"CaseSetCategory","description":"Represents an ordered category used to group case sets."},"CaseSetDataCollectionLink":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_set_id":{"type":"string","format":"uuid","title":"Case Set Id","description":"The ID of the case set. FOREIGN KEY"},"case_set":{"description":"The case set","$ref":"#/components/schemas/CaseSet","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true}},"type":"object","required":["case_set_id","data_collection_id"],"title":"CaseSetDataCollectionLink","description":"Represents a case set membership link to a data collection."},"CaseSetMember":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_set_id":{"type":"string","format":"uuid","title":"Case Set Id","description":"The ID of the case set. FOREIGN KEY"},"case_set":{"description":"The case set","$ref":"#/components/schemas/CaseSet","nullable":true},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The ID of the case. FOREIGN KEY"},"case":{"description":"The case","$ref":"#/components/schemas/Case","nullable":true},"classification":{"description":"The classification of the case","$ref":"#/components/schemas/CaseClassification","nullable":true}},"type":"object","required":["case_set_id","case_id"],"title":"CaseSetMember","description":"Represents a case's membership of a case set."},"CaseSetRights":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"created_in_data_collection_id":{"type":"string","format":"uuid","title":"Created In Data Collection Id","description":"The ID of the data collection where the item was created"},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType"},"data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Data Collection Ids","description":"The IDs of the data collections in which the item is currently shared, including the created_in_data_collection_id"},"is_full_access":{"type":"boolean","title":"Is Full Access","description":"Whether the user has full access to the item, i.e. all rights on all data collections"},"add_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Add Data Collection Ids","description":"The IDs of the data collections to which the item is allowed to be added"},"remove_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Remove Data Collection Ids","description":"The IDs of the data collections from which the item is allowed to be removed. If remove_data_collection_ids is equal to data_collection_ids, the item is allowed to be deleted"},"can_delete":{"type":"boolean","title":"Can Delete","description":"Whether the item can be deleted."},"shared_in_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Shared In Data Collection Ids","description":"The IDs of the data collections in which the item is currently shared, excluding the created_in_data_collection_id"},"case_set_id":{"type":"string","format":"uuid","title":"Case Set Id","description":"The ID of the case set"},"read_case_set":{"type":"boolean","title":"Read Case Set","description":"Whether the case set is allowed to be read"},"write_case_set":{"type":"boolean","title":"Write Case Set","description":"Whether the case set is allowed to be written"}},"type":"object","required":["created_in_data_collection_id","case_type_id","data_collection_ids","is_full_access","add_data_collection_ids","remove_data_collection_ids","can_delete","shared_in_data_collection_ids","case_set_id","read_case_set","write_case_set"],"title":"CaseSetRights","description":"Represents a user's rights to read, write, share, or delete one case set.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCaseRights:\nRepresents a user's data-collection rights for one case-domain item."},"CaseSetStatus":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseSetStatus, UNIQUE"},"description":{"title":"Description","description":"The description of the CaseSetStatus","type":"string","nullable":true},"rank":{"type":"integer","title":"Rank","description":"The rank of the CaseSetStatus, for (partial) ordering.","default":0}},"type":"object","required":["name","description"],"title":"CaseSetStatus","description":"Represents an ordered status assignable to a case set."},"CaseStats":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType."},"case_set_id":{"title":"Case Set Id","description":"The ID of the case set, if applicable.","type":"string","nullable":true},"n_cases":{"type":"integer","minimum":0.0,"title":"N Cases","description":"The number of cases in the case set.","default":0},"n_own_cases":{"type":"integer","minimum":0.0,"title":"N Own Cases","description":"The number of own cases in the case set.","default":0},"first_case_date":{"title":"First Case Date","description":"The date of the first case. In case the user has rights only to lower time resolution for the case date, the first day of the week, month, quarter, year, as available to the user, is used during calculation.","type":"string","nullable":true},"last_case_date":{"title":"Last Case Date","description":"The date of the last case. In case the user has rights only to lower time resolution for the case date, the first day of the week, month, quarter, year, as available to the user, is used during calculation.","type":"string","nullable":true}},"type":"object","required":["case_type_id"],"title":"CaseStats","description":"Represents aggregate statistics for cases or a case set.\n\nModel validation: Own cases cannot exceed total cases. Empty statistics must\nomit both date bounds; non-empty statistics require both bounds in chronological\norder. Invalid combinations raise ``ValueError`` during model validation.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance."},"CaseType":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseType"},"description":{"title":"Description","description":"The description of the CaseType","type":"string","nullable":true},"disease_id":{"title":"Disease Id","description":"The ID of the disease. FOREIGN KEY","type":"string","nullable":true},"disease":{"description":"The disease","$ref":"#/components/schemas/Disease","nullable":true},"etiological_agent_id":{"title":"Etiological Agent Id","description":"The ID of the etiological agent. FOREIGN KEY","type":"string","nullable":true},"etiological_agent":{"description":"The etiological agent","$ref":"#/components/schemas/EtiologicalAgent","nullable":true},"props":{"$ref":"#/components/schemas/CaseTypeProps","description":"Operational settings for this CaseType, stored as JSON. Input may be a CaseTypeProps instance, a mapping, or a JSON object string. Other input types raise ValueError. The settings serialize as a dictionary."}},"type":"object","required":["name"],"title":"CaseType","description":"Represents the data equivalent of an epidemiological case definition.\n\nBy extension, it can also include non-cases that are relevant for the case\ndefinition, e.g. controls or samples from non-human origin. In addition, the\nCaseType contains some operational settings information.\n\nColumns and dimensions are linked to CaseTypes."},"CaseTypeAccessAbac":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType"},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection"},"is_private":{"type":"boolean","title":"Is Private","description":"Whether the data collection is private, limited to the CaseTypes in the CaseTypeSet. When true, add/remove case and add/remove case set are considered (i) as the right to create/delete a case or case set in this data collection (setting case.created_in_data_collection to this data collection) and (ii) as the right to share the case or case set further in other data collections. Deleting a case or case set is only allowed when it can or has been removed from all other data collections as well."},"add_case":{"type":"boolean","title":"Add Case","description":"Whether cases may be added, limited to the CaseType and data collection"},"remove_case":{"type":"boolean","title":"Remove Case","description":"Whether cases may be removed, limited to the CaseType and data collection"},"add_case_set":{"type":"boolean","title":"Add Case Set","description":"Whether case sets may be added, limited to the CaseType and data collection"},"remove_case_set":{"type":"boolean","title":"Remove Case Set","description":"Whether case sets may be removed, limited to the CaseType and data collection"},"read_col_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Read Col Ids","description":"The IDs of the columns for which values can be read, limited to the CaseType and data collection"},"write_col_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Write Col Ids","description":"The IDs of the columns for which values can be updated, limited to the CaseTypes in the CaseTypeSet"},"read_case_set":{"type":"boolean","title":"Read Case Set","description":"Whether case set be read, limited to the CaseType and data collection"},"write_case_set":{"type":"boolean","title":"Write Case Set","description":"Whether case set be updated, limited to the CaseType and data collection"}},"type":"object","required":["case_type_id","data_collection_id","is_private","add_case","remove_case","add_case_set","remove_case_set","read_col_ids","write_col_ids","read_case_set","write_case_set"],"title":"CaseTypeAccessAbac","description":"Represents effective access rights for one case type and data collection."},"CaseTypeProps":{"properties":{"create_max_n_cases":{"type":"integer","minimum":0.0,"title":"Create Max N Cases","description":"Maximum number of cases that can be created in one batch, if the user's rights are constrained by this setting. If 0, the service default is used.","default":0},"read_max_n_cases":{"type":"integer","minimum":0.0,"title":"Read Max N Cases","description":"Maximum number of cases that can be read in one batch, if the user's rights are constrained by this setting. If 0, the service default is used.","default":0},"read_max_tree_size":{"type":"integer","minimum":0.0,"title":"Read Max Tree Size","description":"Maximum number of cases for which a tree may be calculated, if the user's rights are constrained by this setting. If 0, the service default is used.","default":0},"update_max_n_cases":{"type":"integer","minimum":0.0,"title":"Update Max N Cases","description":"Maximum number of cases that can be updated in one batch, if the user's rights are constrained by this setting. If 0, the service default is used.","default":0},"delete_max_n_cases":{"type":"integer","minimum":0.0,"title":"Delete Max N Cases","description":"Maximum number of cases that can be deleted in one batch, if the user's rights are constrained by this setting. If 0, the service default is used.","default":0}},"type":"object","title":"CaseTypeProps","description":"Represents operational settings stored as one CaseType JSON column.\n\nA value of 0 for any field means \"use the service-level default\" rather than\n\"no restriction\". The service applies its configured default when it encounters 0."},"CaseTypeSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseTypeSet, UNIQUE"},"description":{"title":"Description","description":"The description of the CaseTypeSet","type":"string","nullable":true},"case_type_set_category_id":{"type":"string","format":"uuid","title":"Case Type Set Category Id","description":"The ID of the category of the CaseTypeSet. FOREIGN KEY"},"case_type_set_category":{"description":"The category of the CaseTypeSet","$ref":"#/components/schemas/CaseTypeSetCategory","nullable":true},"rank":{"type":"number","title":"Rank","description":"The rank of the CaseTypeSet, establishing a partial order"}},"type":"object","required":["name","case_type_set_category_id","rank"],"title":"CaseTypeSet","description":"Represents an ordered, categorized set of CaseTypes."},"CaseTypeSetCaseTypeUpdateAssociationRequestBody":{"properties":{"case_type_set_members":{"items":{"$ref":"#/components/schemas/CaseTypeSetMember"},"type":"array","maxItems":10000,"title":"Case Type Set Members"}},"type":"object","required":["case_type_set_members"],"title":"CaseTypeSetCaseTypeUpdateAssociationRequestBody","description":"Represents a request to replace the association between a case type set and its\ncase types.\n\nThe provided members keep the set synchronized for downstream access\npolicies and presets."},"CaseTypeSetCategory":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseTypeSet category"},"description":{"title":"Description","description":"The description of the CaseTypeSet category","type":"string","nullable":true},"rank":{"type":"integer","title":"Rank","description":"The rank of the CaseTypeSet category"},"purpose":{"$ref":"#/components/schemas/CaseTypeSetCategoryPurpose","description":"The purpose of the CaseTypeSet category, serialized as its string value.","default":"CONTENT"}},"type":"object","required":["name","rank"],"title":"CaseTypeSetCategory","description":"Represents a category that groups CaseType sets by purpose."},"CaseTypeSetCategoryPurpose":{"type":"string","enum":["CONTENT","SECURITY"],"title":"CaseTypeSetCategoryPurpose","description":"Identify whether a case-type-set category serves content or security."},"CaseTypeSetMember":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_type_set_id":{"type":"string","format":"uuid","title":"Case Type Set Id","description":"The ID of the CaseTypeSet. FOREIGN KEY"},"case_type_set":{"description":"The CaseTypeSet","$ref":"#/components/schemas/CaseTypeSet","nullable":true},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType. FOREIGN KEY"},"case_type":{"description":"The CaseType","$ref":"#/components/schemas/CaseType","nullable":true}},"type":"object","required":["case_type_set_id","case_type_id"],"title":"CaseTypeSetMember","description":"Represents membership of a CaseType in a CaseType set."},"CaseTypeShareAbac":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType"},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection"},"add_case_from_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Add Case From Data Collection Ids","description":"The IDs of the data collections from which cases may be added to this data collection, limited to the CaseType"},"remove_case_from_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Remove Case From Data Collection Ids","description":"The IDs of the data collections from which cases may be removed from this data collection, limited to the CaseType"},"add_case_set_from_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Add Case Set From Data Collection Ids","description":"The IDs of the data collections from which case sets may be added to this data collection, limited to the CaseType"},"remove_case_set_from_data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Remove Case Set From Data Collection Ids","description":"The IDs of the data collections from which case sets may be removed from this data collection, limited to the CaseType"}},"type":"object","required":["case_type_id","data_collection_id","add_case_from_data_collection_ids","remove_case_from_data_collection_ids","add_case_set_from_data_collection_ids","remove_case_set_from_data_collection_ids"],"title":"CaseTypeShareAbac","description":"Represents source-dependent share rights into one target collection."},"CaseUploadResult":{"properties":{"logs":{"items":{"$ref":"#/components/schemas/EtlLogItem"},"type":"array","title":"Logs","description":"Log items capturing messages and events that occurred during the operation."},"id":{"title":"Id","description":"The unique identifier for the specific object instance that this result pertains to, if applicable. E.g. the object that was created or updated as part of the upload.","type":"string","nullable":true},"status":{"$ref":"#/components/schemas/EtlStatus","description":"Upload status; successful states require no error logs and failed states require an error log.","default":"PENDING"},"is_new":{"type":"boolean","title":"Is New","description":"Indicates whether the object did not exist before start of the upload. False in case upload failed before this could be determined.","default":false},"identifiers":{"title":"Identifiers","description":"The results of uploading the identifiers associated with the case, if any were provided, in the same order as provided.","items":{"$ref":"#/components/schemas/UploadResult"},"nullable":true},"data_issues":{"items":{"$ref":"#/components/schemas/CaseDataIssue"},"type":"array","title":"Data Issues","description":"The data issues found for the original case content."},"validated_content":{"additionalProperties":{"type":"string","nullable":true},"propertyNames":{"format":"uuid"},"type":"object","title":"Validated Content","description":"The validated content of the case after validation or upload."},"read_sets":{"title":"Read Sets","description":"The results of uploading the read sets associated with the case, if any were provided, in the same order as provided.","items":{"$ref":"#/components/schemas/UploadResult"},"nullable":true},"seqs":{"title":"Seqs","description":"The results of uploading the sequences associated with the case, if any were provided, in the same order as provided.","items":{"$ref":"#/components/schemas/UploadResult"},"nullable":true}},"type":"object","title":"CaseUploadResult","description":"Represents one case upload result and its content validation issues.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nParentUploadResult:\nRepresents upload results for a parent payload and its children.\n\nSubclasses correspond to their ParentForUpload payload type.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResultWithIdentifiers:\nRepresents an upload result with nested identifier results.\n\nIt mirrors a for-upload class that has identifiers.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResult:\nRepresents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResultWithIdentifiers:\nRepresents an upload result with nested identifier results.\n\nIt mirrors a for-upload class that has identifiers.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResult:\nRepresents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nUploadResult:\nRepresents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance."},"Col":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType. FOREIGN KEY"},"case_type":{"description":"The CaseType","$ref":"#/components/schemas/CaseType","nullable":true},"dim_id":{"type":"string","format":"uuid","title":"Dim Id","description":"The ID of the dimension. FOREIGN KEY"},"dim":{"description":"The dimension","$ref":"#/components/schemas/Dim","nullable":true},"ref_col_id":{"type":"string","format":"uuid","title":"Ref Col Id","description":"The ID of the column. FOREIGN KEY"},"ref_col":{"description":"The column","$ref":"#/components/schemas/RefCol","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code for the Col, equal to the RefCol code and, if present, dot 'x' occurrence. E.g. 'Host.Vaccination.Date.COVID19.x1' for occurrence=1, 'Specimen.Sampling.Date' for occurrence=0. Numeric values are normalized to strings."},"rank":{"type":"integer","title":"Rank","description":"The rank of the Col within the CaseType Dim for (partial) ordering, if different from the RefDim and RefCol rank."},"label":{"title":"Label","description":"The label of the Col for this CaseType, if different from the RefCol label.","type":"string","nullable":true},"description":{"title":"Description","description":"Description of the Col.","type":"string","nullable":true},"min_value":{"title":"Min Value","description":"The minimum value for a numeric column","type":"number","nullable":true},"max_value":{"title":"Max Value","description":"The maximum value for a numeric column","type":"number","nullable":true},"min_datetime":{"title":"Min Datetime","description":"The minimum datetime for a time column","type":"string","nullable":true},"max_datetime":{"title":"Max Datetime","description":"The maximum datetime for a time column","type":"string","nullable":true},"min_length":{"title":"Min Length","description":"The minimum length for a text column, if not empty","type":"integer","nullable":true},"max_length":{"title":"Max Length","description":"The maximum length for a text column, if not empty","type":"integer","nullable":true},"pattern":{"title":"Pattern","description":"The regular expression for a text column, if not empty","type":"string","nullable":true},"ncbi_taxid":{"title":"Ncbi Taxid","description":"The NCBI taxid for the column, if the column is a genetic sequence","type":"string","nullable":true},"genetic_sequence_col_id":{"title":"Genetic Sequence Col Id","description":"The ID of the genetic sequence column, if this is a genetic sequence column. FOREIGN KEY","type":"string","nullable":true},"tree_algorithm_codes":{"title":"Tree Algorithm Codes","description":"The tree algorithms usable for the Col. A set is preserved, a JSON array string is decoded, and other iterables are converted to a set. Values serialize as a sorted list of string codes; null remains null.","items":{"$ref":"#/components/schemas/TreeAlgorithmType"},"nullable":true},"props":{"additionalProperties":true,"type":"object","title":"Props","description":"Additional properties of the Col."}},"type":"object","required":["case_type_id","dim_id","ref_col_id","code","rank"],"title":"Col","description":"Represents a CaseType column containing case data within a dimension.\n\nIt is derived from a RefCol, from which it takes properties such as the column\ntype."},"ColSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the ColSet, UNIQUE"},"description":{"title":"Description","description":"The description of the ColSet","type":"string","nullable":true}},"type":"object","required":["name"],"title":"ColSet","description":"Represents a named set of CaseType columns."},"ColSetColUpdateAssociationRequestBody":{"properties":{"col_set_members":{"items":{"$ref":"#/components/schemas/ColSetMember"},"type":"array","maxItems":10000,"title":"Col Set Members"}},"type":"object","required":["col_set_members"],"title":"ColSetColUpdateAssociationRequestBody","description":"Represents a request to replace the association between a column set and its columns.\n\nThe provided members keep read/write scopes and user-interface column\ngroupings aligned."},"ColSetMember":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"col_set_id":{"type":"string","format":"uuid","title":"Col Set Id","description":"The ID of the ColSet. FOREIGN KEY"},"col_set":{"description":"The ColSet","$ref":"#/components/schemas/ColSet","nullable":true},"col_id":{"type":"string","format":"uuid","title":"Col Id","description":"The ID of the Col. FOREIGN KEY"},"col":{"description":"The Col","$ref":"#/components/schemas/Col","nullable":true}},"type":"object","required":["col_set_id","col_id"],"title":"ColSetMember","description":"Represents membership of a column in a column set."},"ColType":{"type":"string","enum":["TEXT","CONTEXT_FREE_GRAMMAR_JSON","CONTEXT_FREE_GRAMMAR_XML","REGULAR_LANGUAGE","NOMINAL","ORDINAL","INTERVAL","TIME_DAY","TIME_WEEK","TIME_MONTH","TIME_QUARTER","TIME_YEAR","GEO_LATLON","GEO_REGION","ID_PERSON","ID_CASE","ID_SAMPLE","ID_EVENT","ID_GENETIC_SEQUENCE","DECIMAL_0","DECIMAL_1","DECIMAL_2","DECIMAL_3","DECIMAL_4","DECIMAL_5","DECIMAL_6","GENETIC_READS","GENETIC_SEQUENCE","GENETIC_PROFILE","GENETIC_DISTANCE","ORGANIZATION","OTHER"],"title":"ColType","description":"Classify the representation and semantics of a case-data column."},"CommandName":{"type":"string","enum":["ColSetCrudCommand","RetrieveCaseSetStatsCommand","CaseSetStatusCrudCommand","RetrieveCaseSetRightsCommand","CaseSetCrudCommand","DiseaseCrudCommand","RegionCrudCommand","CaseTypeSetCaseTypeUpdateAssociationCommand","CaseDataCollectionLinkCrudCommand","UpdateUserCommand","RetrieveFeatureFlagsCommand","RegisterInvitedUserCommand","CaseSetDataCollectionLinkCrudCommand","OrganizationShareCasePolicyCrudCommand","OrganizationAdminPolicyCrudCommand","DataCollectionCrudCommand","RetrieveSubRolesCommand","RetrieveOrganizationsUnderAdminCommand","CaseIdentifierCrudCommand","CaseTypeSetCategoryCrudCommand","OrganizationSetOrganizationUpdateAssociationCommand","RetrieveOrganizationContactsCommand","CaseSetCategoryCrudCommand","CaseTypeCrudCommand","OutageCrudCommand","DiseaseEtiologicalAgentUpdateAssociationCommand","ContactCrudCommand","OrganizationIdentifierIssuerLinkCrudCommand","DimCrudCommand","UserCrudCommand","CreateFileForSeqCommand","RetrieveCasesByIdCommand","RetrieveLicensesCommand","RetrievePhylogeneticTreeByCasesCommand","RetrieveProtocolsCommand","RetrieveContainingRegionCommand","RetrieveGeneticSequenceFastaByIdCommand","RetrieveInviteUserConstraintsCommand","ConceptCrudCommand","TreeAlgorithmClassCrudCommand","DataCollectionSetMemberCrudCommand","ConceptRelationCrudCommand","DataCollectionSetCrudCommand","RegionSetShapeCrudCommand","DataCollectionSetDataCollectionUpdateAssociationCommand","ColSetColUpdateAssociationCommand","GeneticDistanceProtocolCrudCommand","OrganizationCrudCommand","ConceptSetCrudCommand","RefDimCrudCommand","CreateCaseSetCommand","SiteCrudCommand","RetrieveOwnPermissionsCommand","RegionSetCrudCommand","AnonymizeUserCommand","UpdateUserOwnOrganizationCommand","RegionRelationCrudCommand","UserAccessCasePolicyCrudCommand","OrganizationSetMemberCrudCommand","RetrieveCaseTypeStatsCommand","CaseTypeSetMemberCrudCommand","RetrieveCompleteCaseTypeCommand","GetIdentityProvidersCommand","TreeAlgorithmCrudCommand","RetrieveIsOwnCasesCommand","RetrieveOutagesCommand","UserShareCasePolicyCrudCommand","OrganizationSetCrudCommand","UpdateCaseCreatedInDataCollectionCommand","RetrieveGeneticSequenceFastaByCaseCommand","InviteUserCommand","EtiologicalAgentCrudCommand","OrganizationIdentifierIssuerLinkUpdateAssociationCommand","RetrieveOrganizationAdminNameEmailsCommand","UploadCasesCommand","IdentifierIssuerCrudCommand","ColCrudCommand","RetrieveCaseRightsCommand","RefColCrudCommand","RetrieveCasesByQueryCommand","RetrieveCaseCohortLinksByCaseTypeCommand","RetrieveSimilarCasesCommand","CreateFileForReadSetCommand","EtiologyCrudCommand","CaseSetMemberCrudCommand","ColSetMemberCrudCommand","RetrievePhylogeneticTreeByProfilesCommand","CaseCrudCommand","RetrieveGeneticSequenceByIdCommand","UserInvitationCrudCommand","CaseTypeSetCrudCommand","OrganizationAccessCasePolicyCrudCommand"],"title":"CommandName"},"ComparisonOperator":{"type":"string","enum":["<","<=","=",">=",">","!="],"title":"ComparisonOperator","description":"Encapsulates boundary comparison operators supported by range filters."},"CompleteCaseType":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the CaseType"},"description":{"title":"Description","description":"The description of the CaseType","type":"string","nullable":true},"disease_id":{"title":"Disease Id","description":"The ID of the disease. FOREIGN KEY","type":"string","nullable":true},"disease":{"description":"The disease","$ref":"#/components/schemas/Disease","nullable":true},"etiological_agent_id":{"title":"Etiological Agent Id","description":"The ID of the etiological agent. FOREIGN KEY","type":"string","nullable":true},"etiological_agent":{"description":"The etiological agent","$ref":"#/components/schemas/EtiologicalAgent","nullable":true},"props":{"$ref":"#/components/schemas/CaseTypeProps","description":"Operational settings for this CaseType, stored as JSON. Input may be a CaseTypeProps instance, a mapping, or a JSON object string. Other input types raise ValueError. The settings serialize as a dictionary."},"user_id":{"title":"User Id","description":"The ID of the user for whom the complete CaseType is retrieved.","type":"string","nullable":true},"etiologies":{"additionalProperties":{"$ref":"#/components/schemas/Etiology"},"propertyNames":{"format":"uuid"},"type":"object","title":"Etiologies","description":"The etiologies used by the CaseType"},"etiological_agents":{"additionalProperties":{"$ref":"#/components/schemas/EtiologicalAgent"},"propertyNames":{"format":"uuid"},"type":"object","title":"Etiological Agents","description":"The etiological agents used by the CaseType"},"ref_dims":{"additionalProperties":{"$ref":"#/components/schemas/RefDim"},"propertyNames":{"format":"uuid"},"type":"object","title":"Ref Dims","description":"The reference dimensions used by the CaseType"},"ref_cols":{"additionalProperties":{"$ref":"#/components/schemas/RefCol"},"propertyNames":{"format":"uuid"},"type":"object","title":"Ref Cols","description":"The reference columns used by the CaseType"},"dims":{"additionalProperties":{"$ref":"#/components/schemas/Dim"},"propertyNames":{"format":"uuid"},"type":"object","title":"Dims","description":"The Dims for the CaseType"},"cols":{"additionalProperties":{"$ref":"#/components/schemas/Col"},"propertyNames":{"format":"uuid"},"type":"object","title":"Cols","description":"The Cols for the CaseType"},"ordered_dim_ids":{"items":{"type":"string","format":"uuid"},"type":"array","title":"Ordered Dim Ids","description":"The Dims ordered by their (occurrence, rank, code). Calculated during model validation."},"ordered_col_ids":{"items":{"type":"string","format":"uuid"},"type":"array","title":"Ordered Col Ids","description":"The Cols ordered by their (ordered_dim, rank, code). Calculated during model validation."},"ordered_col_ids_by_dim":{"additionalProperties":{"items":{"type":"string","format":"uuid"},"type":"array"},"propertyNames":{"format":"uuid"},"type":"object","title":"Ordered Col Ids By Dim","description":"The Cols per Dim, ordered by (rank, code). Calculated during model validation."},"genetic_distance_protocols":{"additionalProperties":{"$ref":"#/components/schemas/GeneticDistanceProtocol"},"propertyNames":{"format":"uuid"},"type":"object","title":"Genetic Distance Protocols","description":"Genetic distance protocols used by the CaseType"},"tree_algorithms":{"additionalProperties":{"$ref":"#/components/schemas/TreeAlgorithm"},"propertyNames":{"$ref":"#/components/schemas/TreeAlgorithmType"},"type":"object","title":"Tree Algorithms","description":"The tree algorithms used by the CaseType"},"case_type_access_abacs":{"additionalProperties":{"$ref":"#/components/schemas/CaseTypeAccessAbac"},"propertyNames":{"format":"uuid"},"type":"object","title":"Case Type Access Abacs","description":"The CaseTypeAccessAbac objects by data collection ID"},"case_type_share_abacs":{"additionalProperties":{"$ref":"#/components/schemas/CaseTypeShareAbac"},"propertyNames":{"format":"uuid"},"type":"object","title":"Case Type Share Abacs","description":"The CaseTypeShareAbac objects by data collection ID"},"case_date_dim_id":{"title":"Case Date Dim Id","description":"The Dim ID to use for time-based statistics unless otherwise specified","type":"string","nullable":true},"case_date_col_type_map":{"additionalProperties":{"type":"string","format":"uuid"},"propertyNames":{"$ref":"#/components/schemas/ColType"},"type":"object","title":"Case Date Col Type Map","description":"The mapping of column types, restricted to time-related column types, to column IDs for the case date column of the CaseType. Calculated during model validation."}},"type":"object","required":["name","user_id","etiologies","etiological_agents","ref_dims","ref_cols","dims","cols","genetic_distance_protocols","tree_algorithms","case_type_access_abacs","case_type_share_abacs","case_date_dim_id"],"title":"CompleteCaseType","description":"Represents a case type with its related entities and effective ABAC data.\n\nThe model avoids repeated queries and is unique for each inherited case-type\nidentifier and ``user_id`` pair.\n\nModel validation: The case-date dimension, when set, must exist in ``dims``.\nValidation replaces the derived ordering fields with dimension and column IDs\nsorted by their configured occurrence, rank, and code. It also replaces the\ncase-date column map with at most one time-related column per column type;\ninvalid references or duplicate time column types raise ``ValueError``.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nCaseType:\nRepresents the data equivalent of an epidemiological case definition.\n\nBy extension, it can also include non-cases that are relevant for the case\ndefinition, e.g. controls or samples from non-human origin. In addition, the\nCaseType contains some operational settings information.\n\nColumns and dimensions are linked to CaseTypes."},"CompositeFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"title":"Key","type":"string","nullable":true},"type":{"type":"string","const":"COMPOSITE","title":"Type","default":"COMPOSITE"},"filters":{"items":{"anyOf":[{"$ref":"#/components/schemas/ExistsFilter"},{"$ref":"#/components/schemas/EqualsBooleanFilter"},{"$ref":"#/components/schemas/EqualsNumberFilter"},{"$ref":"#/components/schemas/EqualsStringFilter"},{"$ref":"#/components/schemas/EqualsUuidFilter"},{"$ref":"#/components/schemas/NumberRangeFilter"},{"$ref":"#/components/schemas/DateRangeFilter"},{"$ref":"#/components/schemas/DatetimeRangeFilter"},{"$ref":"#/components/schemas/PartialDateRangeFilter"},{"$ref":"#/components/schemas/RegexFilter"},{"$ref":"#/components/schemas/NumberSetFilter"},{"$ref":"#/components/schemas/StringSetFilter"},{"$ref":"#/components/schemas/UuidSetFilter"},{"$ref":"#/components/schemas/NoFilter"},{"$ref":"#/components/schemas/Filter"}]},"type":"array","minItems":1,"title":"Filters","description":"The list of filters."},"operator":{"$ref":"#/components/schemas/LogicalOperator","description":"The boolean operator for the composite filter.","default":"AND"}},"type":"object","required":["filters"],"title":"CompositeFilter","description":"Represents a filter that combines child filters using a logical operator.\n\nModel validation:\nAt least one child filter is required. `NOT` requires exactly one child, and\noperators other than `AND` and `OR` support no more than two children."},"Concept":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"concept_set_id":{"type":"string","format":"uuid","title":"Concept Set Id","description":"The ID of the concept set. FOREIGN KEY"},"concept_set":{"description":"The concept set.","$ref":"#/components/schemas/ConceptSet","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"Concept code within the set"},"name":{"title":"Name","description":"The name of the concept.","type":"string","nullable":true},"description":{"title":"Description","description":"The description of the concept.","type":"string","nullable":true},"rank":{"title":"Rank","description":"The rank of the concept within the set. Must be provided for ordinal sets, for other sets it is optional and can be used for sorting.","type":"integer","nullable":true},"props":{"title":"Props","description":"Additional concept properties supplied as a mapping, JSON object string, or None. The lb and ub values must be numeric and are normalized to floats; lb_in and ub_in must be booleans or integers and are normalized to booleans. The mapping is serialized as a JSON object string, while None is preserved.","additionalProperties":true,"nullable":true}},"type":"object","required":["concept_set_id","code"],"title":"Concept","description":"Represents a concept belonging to a typed ontology concept set."},"ConceptRelation":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"from_concept_id":{"type":"string","format":"uuid","title":"From Concept Id","description":"The ID of the first concept. FOREIGN KEY"},"from_concept":{"description":"The first concept.","$ref":"#/components/schemas/Concept","nullable":true},"to_concept_id":{"type":"string","format":"uuid","title":"To Concept Id","description":"The ID of the second concept. FOREIGN KEY"},"to_concept":{"description":"The second concept.","$ref":"#/components/schemas/Concept","nullable":true},"relation":{"$ref":"#/components/schemas/ConceptRelationType","description":"The relation type. Accepts an enum member or its string value and is serialized as that string value."}},"type":"object","required":["from_concept_id","to_concept_id","relation"],"title":"ConceptRelation","description":"Represents a directed relation between two ontology concepts."},"ConceptRelationType":{"type":"string","enum":["CONTAINS"],"title":"ConceptRelationType","description":"Identify supported semantic relationships between concepts."},"ConceptSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of the concept set"},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the concept set"},"type":{"$ref":"#/components/schemas/ConceptSetType","description":"The concept set type. Accepts an enum member or its string value and is serialized as that string value."},"unit":{"description":"The unit for a quantitative concept set, if applicable. Accepts an enum member or its string value and is serialized as that string value; None is preserved.","$ref":"#/components/schemas/Unit","nullable":true},"description":{"title":"Description","description":"The description of the concept set.","type":"string","nullable":true}},"type":"object","required":["code","name","type"],"title":"ConceptSet","description":"Represents a typed set of concepts in the ontology.\n\nModel validation: Quantitative concept sets require a unit, while\nnon-quantitative concept sets must not specify one."},"ConceptSetType":{"type":"string","enum":["CONTEXT_FREE_GRAMMAR_JSON","CONTEXT_FREE_GRAMMAR_XML","REGULAR_LANGUAGE","NOMINAL","ORDINAL","INTERVAL"],"title":"ConceptSetType","description":"Classify the language or value scale represented by a concept set."},"Contact":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"site_id":{"type":"string","format":"uuid","title":"Site Id","description":"The ID of the site in case the contact is site-specific. FOREIGN KEY"},"site":{"description":"The site corresponding to the ID","$ref":"#/components/schemas/Site","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the contact, UNIQUE"},"email":{"title":"Email","description":"The email address of the contact","type":"string","nullable":true},"phone":{"title":"Phone","description":"The phone number of the contact","type":"string","nullable":true}},"type":"object","required":["site_id","name"],"title":"Contact","description":"Represents contact information associated with an organization site."},"CreateCaseSetRequestBody":{"properties":{"case_set":{"$ref":"#/components/schemas/CaseSet","description":"The case set to create."},"data_collection_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"uniqueItems":true,"title":"Data Collection Ids","description":"The data collections to associate with the case set, other than the created_in_data_collection. The latter will be removed from the set if present."},"case_ids":{"title":"Case Ids","description":"The cases to associate with the case set upon creation, if any. These cases must have the same CaseType as the case set.","items":{"type":"string","format":"uuid"},"nullable":true}},"type":"object","required":["case_set"],"title":"CreateCaseSetRequestBody","description":"Represents a request to create a case set and its initial associations.\n\nModel validation:\n    The creating data collection is removed from the additional data\n    collections because it is already associated through the case set."},"CreateFileForReadSetRequestBody":{"properties":{"file_content":{"type":"string","maxLength":104857600,"title":"File Content","description":"The content of the file to create as base64 encoded bytes."},"is_fwd":{"type":"boolean","title":"Is Fwd","description":"Whether the file is for the forward reads (True) or reverse reads (False)."},"file_format":{"$ref":"#/components/schemas/ReadsFileFormat","description":"The format of the reads file.","default":1},"file_compression":{"$ref":"#/components/schemas/FileCompression","description":"The compression of the reads file.","default":1}},"type":"object","required":["file_content","is_fwd"],"title":"CreateFileForReadSetRequestBody","description":"Represents a request to upload a raw-reads file for a case read-set column.\n\nThe command accepts base64 content with optional compression, distinguishes\nforward from reverse reads, and returns the stored file ID."},"CreateFileForSeqRequestBody":{"properties":{"file_content":{"type":"string","maxLength":104857600,"title":"File Content","description":"The content of the file to create as base64 encoded bytes."},"file_format":{"$ref":"#/components/schemas/SeqFileFormat","description":"The format of the sequence file.","default":2},"file_compression":{"$ref":"#/components/schemas/FileCompression","description":"The compression of the sequence file.","default":1}},"type":"object","required":["file_content"],"title":"CreateFileForSeqRequestBody","description":"Represents a request to upload an assembled file for a case sequence column.\n\nThe command accepts base64 content with optional compression and returns the\nstored file ID."},"DataCollection":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of a data collection, UNIQUE"},"description":{"title":"Description","description":"The description of the data collection.","type":"string","nullable":true}},"type":"object","required":["name"],"title":"DataCollection","description":"Represents a named collection of data managed by commondb."},"DataCollectionSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the data collection set"},"description":{"title":"Description","description":"The description of the data collection set.","type":"string","nullable":true}},"type":"object","required":["name"],"title":"DataCollectionSet","description":"Represents a named, persisted collection of data collections."},"DataCollectionSetDataCollectionUpdateAssociationRequestBody":{"properties":{"data_collection_set_members":{"items":{"$ref":"#/components/schemas/DataCollectionSetMember"},"type":"array","maxItems":10000,"title":"Data Collection Set Members"}},"type":"object","required":["data_collection_set_members"],"title":"DataCollectionSetDataCollectionUpdateAssociationRequestBody","description":"Represents a request to update the association between a DataCollectionSet and\nDataCollections.\n\nThis command manages the many-to-many relationship by creating or updating\nDataCollectionSetMember associations between data collection sets and\nindividual data collections."},"DataCollectionSetMember":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"data_collection_set_id":{"type":"string","format":"uuid","title":"Data Collection Set Id","description":"The ID of the data collection set. FOREIGN KEY"},"data_collection_set":{"description":"The data collection set","$ref":"#/components/schemas/DataCollectionSet","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true}},"type":"object","required":["data_collection_set_id","data_collection_id"],"title":"DataCollectionSetMember","description":"Represents one data collection with a persisted data-collection set."},"DataIssueType":{"type":"string","enum":["MISSING","INVALID","UNAUTHORIZED","CONFLICT","DERIVED","TRANSFORMED"],"title":"DataIssueType","description":"Encapsulates classification of data-quality issues emitted during validation and transformation."},"DateRangeFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"DATE_RANGE","title":"Type","default":"DATE_RANGE"},"lower_bound":{"title":"Lower Bound","description":"The lower bound of the range.","type":"string","nullable":true},"lower_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the lower bound.","default":">="},"upper_bound":{"title":"Upper Bound","description":"The upper bound of the range.","type":"string","nullable":true},"upper_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the upper bound.","default":"<"}},"type":"object","title":"DateRangeFilter","description":"Represents a filter matching dates within the configured bounds."},"DatetimeRangeFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"DATETIME_RANGE","title":"Type","default":"DATETIME_RANGE"},"lower_bound":{"title":"Lower Bound","description":"The lower bound of the range.","type":"string","nullable":true},"lower_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the lower bound.","default":">="},"upper_bound":{"title":"Upper Bound","description":"The upper bound of the range.","type":"string","nullable":true},"upper_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the upper bound.","default":"<"}},"type":"object","title":"DatetimeRangeFilter","description":"Represents a filter matching datetimes within the configured bounds."},"Dim":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The ID of the CaseType. FOREIGN KEY"},"case_type":{"description":"The CaseType","$ref":"#/components/schemas/CaseType","nullable":true},"ref_dim_id":{"type":"string","format":"uuid","title":"Ref Dim Id","description":"The ID of the dimension. FOREIGN KEY"},"ref_dim":{"description":"The dimension","$ref":"#/components/schemas/RefDim","nullable":true},"occurrence":{"type":"integer","minimum":0.0,"title":"Occurrence","description":"The index of the occurrence of the dimension for this CaseType. E.g. for first and second vaccination time it would be 1 and 2. Zero if only a single occurrence is expected or created.","default":0},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code for the Dim, equal to the RefDim code and, if present, dot 'x' occurrence. E.g. 'Host.Vaccination.Date.COVID19.x1' for occurrence=1, 'Specimen.Sampling.Date' for occurrence=0"},"label":{"title":"Label","description":"The label of the Dim for this CaseType, if different from the RefDim label.","type":"string","nullable":true},"description":{"title":"Description","description":"Description of the Dim.","type":"string","nullable":true},"rank":{"type":"integer","title":"Rank","description":"The rank of the Dim within the CaseType for (partial) ordering."},"is_case_date_dim":{"type":"boolean","title":"Is Case Date Dim","description":"Indicates if this Dim is to be used to derive the case date.","default":false}},"type":"object","required":["case_type_id","ref_dim_id","code","rank"],"title":"Dim","description":"Represents a CaseType dimension that logically groups columns.\n\nIt is derived\nfrom a reference dimension and possibly occurs multiple times in the same case\ntype. Multiple occurrences can capture e.g. multiple vaccinations or multiple\nsamples taken during the time span of the case."},"DimType":{"type":"string","enum":["TEXT","IDENTIFIER","NUMBER","TIME","GEO","ORGANIZATION","OTHER"],"title":"DimType","description":"Classify the kind of data grouped by a case-type dimension."},"Disease":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the disease"},"icd_code":{"title":"Icd Code","description":"The ICD code of the disease, if available","type":"string","nullable":true}},"type":"object","required":["name"],"title":"Disease","description":"Represents a disease and its optional ICD code."},"DiseaseEtiologicalAgentUpdateAssociationRequestBody":{"properties":{"etiologies":{"items":{"$ref":"#/components/schemas/Etiology"},"type":"array","maxItems":10000,"title":"Etiologies"}},"type":"object","required":["etiologies"],"title":"DiseaseEtiologicalAgentUpdateAssociationRequestBody","description":"Represents etiological agents associated with a disease."},"EqualsBooleanFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"EQUALS_BOOLEAN","title":"Type","default":"EQUALS_BOOLEAN"},"value":{"type":"boolean","title":"Value","description":"The boolean value to match."}},"type":"object","required":["value"],"title":"EqualsBooleanFilter","description":"Represents a filter matching a boolean value."},"EqualsNumberFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"EQUALS_NUMBER","title":"Type","default":"EQUALS_NUMBER"},"value":{"anyOf":[{"type":"integer"},{"type":"number"},{"type":"string","pattern":"^(?!^[-+.]*$)[+-]?0*\\d*\\.?\\d*$"}],"title":"Value","description":"The number to match."}},"type":"object","required":["value"],"title":"EqualsNumberFilter","description":"Represents a filter matching an integer, floating-point, or decimal value."},"EqualsStringFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"EQUALS_STRING","title":"Type","default":"EQUALS_STRING"},"value":{"type":"string","title":"Value","description":"The string to match."}},"type":"object","required":["value"],"title":"EqualsStringFilter","description":"Represents a filter matching a string value."},"EqualsUuidFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"EQUALS_UUID","title":"Type","default":"EQUALS_UUID"},"value":{"type":"string","format":"uuid","title":"Value","description":"The UUID to match."}},"type":"object","required":["value"],"title":"EqualsUuidFilter","description":"Represents a filter matching a UUID value."},"EtiologicalAgent":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the etiological agent"},"type":{"type":"string","maxLength":255,"title":"Type","description":"The type of the etiological agent"}},"type":"object","required":["name","type"],"title":"EtiologicalAgent","description":"Represents an agent that can cause a disease."},"Etiology":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"disease_id":{"type":"string","format":"uuid","title":"Disease Id","description":"The ID of the disease. FOREIGN KEY"},"disease":{"description":"The disease","$ref":"#/components/schemas/Disease","nullable":true},"etiological_agent_id":{"type":"string","format":"uuid","title":"Etiological Agent Id","description":"The ID of the etiological agent. FOREIGN KEY"},"etiological_agent":{"description":"The etiological agent","$ref":"#/components/schemas/EtiologicalAgent","nullable":true}},"type":"object","required":["disease_id","etiological_agent_id"],"title":"Etiology","description":"Represents a disease etiology associated with an etiological agent."},"EtlLogItem":{"properties":{"timestamp":{"type":"string","format":"date-time","title":"Timestamp","description":"The UTC timestamp when the log item was created."},"code":{"type":"string","title":"Code","description":"A code categorizing the log item."},"message":{"type":"string","title":"Message","description":"The log message describing the event or information."},"severity":{"$ref":"#/components/schemas/LogLevel","description":"Log severity, accepting a LogLevel or member name and serializing to its string value."},"source":{"title":"Source","description":"Optional field to capture source trace information, e.g. relevant source record ids.","type":"string","nullable":true},"target":{"title":"Target","description":"Optional field to capture target trace information, e.g. relevant target record ids created or updated as a result of the logged event.","type":"string","nullable":true}},"type":"object","required":["code","message","severity"],"title":"EtlLogItem","description":"Represents one immutable, structured event in an ETL result accumulator."},"EtlStatus":{"type":"string","enum":["INITIALIZED","PENDING","SKIPPED","FAILED","ERROR","CREATED","UPDATED","MIXED","PROCESSED","SUCCESS"],"title":"EtlStatus","description":"Encapsulates lifecycle outcomes for ETL and upload processing."},"ExistsFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"EXISTS","title":"Type","default":"EXISTS"}},"type":"object","title":"ExistsFilter","description":"Represents a filter matching non-null, non-excluded values."},"FeatureFlagsResponseBody":{"properties":{"feature_flags":{"additionalProperties":{"type":"boolean"},"type":"object","title":"Feature Flags"}},"type":"object","required":["feature_flags"],"title":"FeatureFlagsResponseBody","description":"Represents configured feature flags keyed by their public names."},"FileCompression":{"type":"integer","enum":[1,2],"title":"FileCompression","description":"Encapsulates supported compression methods for biological files.","x-enum-varnames":["NONE","GZIP"]},"Filter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"BASE","title":"Type","default":"BASE"}},"type":"object","title":"Filter","description":"Represents a filter.\n\nThis is a base class from which all actual filter implementations inherit.\n\nAttributes:\n    invert (bool): Whether to invert the filter.\n    key (Hashable | None): The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"GeneticDistanceProtocol":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"seqdb_seq_distance_protocol_id":{"type":"string","format":"uuid","title":"Seqdb Seq Distance Protocol Id","description":"The ID of the protocol in seqdb"},"seqdb_seq_distance_type":{"$ref":"#/components/schemas/SeqDistanceType","description":"The genetic-distance type in seqdb. Integer enum values are accepted during validation and the type is serialized as its integer value."},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the protocol"},"description":{"title":"Description","description":"The description of the protocol","type":"string","nullable":true},"seqdb_max_stored_distance":{"title":"Seqdb Max Stored Distance","description":"The maximum distance that is stored in seqdb for this protocol","type":"number","nullable":true},"seqdb_is_integer_distance":{"type":"boolean","title":"Seqdb Is Integer Distance","description":"Whether the distances between two profiles generated by this protocol are integers in seqdb"},"min_scale_unit":{"type":"number","title":"Min Scale Unit","description":"The minimum unit to be shown in a scale"}},"type":"object","required":["seqdb_seq_distance_protocol_id","seqdb_seq_distance_type","name","seqdb_is_integer_distance","min_scale_unit"],"title":"GeneticDistanceProtocol","description":"Represents a protocol for calculating and storing genetic distances."},"HTTPValidationError":{"properties":{"detail":{"items":{"$ref":"#/components/schemas/ValidationError"},"type":"array","title":"Detail"}},"type":"object","title":"HTTPValidationError"},"HealthResponseBody":{"properties":{"status":{"$ref":"#/components/schemas/HealthStatus"}},"type":"object","required":["status"],"title":"HealthResponseBody","description":"Represents the current application health state."},"HealthStatus":{"type":"string","enum":["HEALTHY","UNHEALTHY"],"title":"HealthStatus","description":"Encapsulates the externally reported application health state."},"IdentifierForUpload":{"properties":{"identifier_issuer_id":{"title":"Identifier Issuer Id","description":"Issuer UUID; at least this field or identifier_issuer_code is required.","type":"string","nullable":true},"identifier_issuer_code":{"title":"Identifier Issuer Code","description":"Issuer code; at least this field or identifier_issuer_id is required.","type":"string","nullable":true},"external_id":{"type":"string","maxLength":255,"title":"External Id","description":"The external identifier"}},"type":"object","required":["external_id"],"title":"IdentifierForUpload","description":"Represents an external identifier used in an upload operation.\n\nIt is defined as the combination of an identifier issuer and identifier.\nThe identifier issuer can be given either as its code or ID to facilitate the\nupload operation where applicable.\nThe model is immutable (frozen) to allow its use in sets and as dictionary keys.\n\nModel validation:\nAt least one of ``identifier_issuer_id`` or ``identifier_issuer_code`` is required."},"IdentifierIssuer":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The name of the issuer"},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the issuer"},"description":{"title":"Description","description":"The description of the identifier issuer.","type":"string","nullable":true}},"type":"object","required":["code","name"],"title":"IdentifierIssuer","description":"Represents a system or process that issues externally supplied identifiers.\n\nAn identifier issuer combined with an identifier issued by it is a universally\nunique value."},"IdentityProvider":{"properties":{"name":{"type":"string","title":"Name","description":"Name of the identity provider"},"label":{"type":"string","title":"Label","description":"Label of the identity provider"},"issuer":{"type":"string","title":"Issuer","description":"The issuer URL of the identity provider"},"auth_protocol":{"$ref":"#/components/schemas/AuthProtocol","description":"The authentication protocol"},"oauth_flow":{"description":"The OAuth flow type of the identity provider","$ref":"#/components/schemas/OAuthFlow","nullable":true},"discovery_url":{"title":"Discovery Url","description":"The discovery URL of the identity provider","type":"string","nullable":true},"client_id":{"title":"Client Id","description":"Client ID requested in tokens; required when the provider is public.","type":"string","nullable":true},"client_secret":{"title":"Client Secret","description":"The client secret","type":"string","nullable":true},"scope":{"title":"Scope","description":"Space-separated OIDC scopes; required when the provider is public.","type":"string","nullable":true},"public":{"type":"boolean","title":"Public","description":"Whether the identity provider is public","default":false}},"type":"object","required":["name","label","issuer","auth_protocol"],"title":"IdentityProvider","description":"Represents configuration for an external identity provider.\n\nModel validation:\nPublic providers require both a client ID and an OIDC scope."},"InviteUserRequestBody":{"properties":{"key":{"title":"Key","description":"Unique user key; an empty value is normalized to omitted.","type":"string","nullable":true},"description":{"title":"Description","description":"The description of the user.","type":"string","nullable":true},"roles":{"items":{"type":"string"},"type":"array","maxItems":10000,"minItems":1,"uniqueItems":true,"title":"Roles","description":"Initial roles, accepting a set, list, or JSON list string and serializing as a list."},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization that the new user will belong to. FOREIGN KEY"}},"type":"object","required":["roles","organization_id"],"title":"InviteUserRequestBody","description":"Represents a request to create and return a UserInvitation for a new user.\n\nThe invitation records a particular user key claim (e.g. email address),\norganization and initial role(s).\n\nA random unique token is added to the invitation, and to be provided to the\nnew user for consuming the invitation."},"LogItem":{"properties":{"level":{"$ref":"#/components/schemas/LogLevel"},"command_id":{"type":"string","title":"Command Id"},"timestamp":{"type":"string","title":"Timestamp"},"duration":{"title":"Duration","type":"number","nullable":true},"software_version":{"type":"string","title":"Software Version"},"topic":{"type":"string","title":"Topic"},"detail":{"anyOf":[{"type":"string"},{"additionalProperties":true,"type":"object"}],"title":"Detail","nullable":true}},"type":"object","required":["level","command_id","timestamp","software_version","topic"],"title":"LogItem","description":"Represents one externally submitted structured application log item."},"LogLevel":{"type":"string","enum":["FATAL","ERROR","WARN","INFO","DEBUG","TRACE"],"title":"LogLevel","description":"Encapsulates specifying a supported logging severity."},"LogRequestBody":{"properties":{"log_items":{"items":{"$ref":"#/components/schemas/LogItem"},"type":"array","title":"Log Items"}},"type":"object","required":["log_items"],"title":"LogRequestBody","description":"Represents structured log items submitted to the commondb logging endpoint."},"LogicalOperator":{"type":"string","enum":["AND","OR","NOT","XOR","NAND","NOR","XNOR","IMPLIES","NIMPLIES"],"title":"LogicalOperator","description":"Encapsulates boolean operators supported by composite filters."},"NoFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"boolean","const":false,"title":"Key","default":false},"type":{"type":"string","const":"NO_FILTER","title":"Type","default":"NO_FILTER"}},"type":"object","title":"NoFilter","description":"Represents a filter retaining every value unless explicitly inverted."},"NumberRangeFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"NUMBER_RANGE","title":"Type","default":"NUMBER_RANGE"},"lower_bound":{"title":"Lower Bound","description":"The lower bound of the range.","type":"number","nullable":true},"lower_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the lower bound.","default":">="},"upper_bound":{"title":"Upper Bound","description":"The upper bound of the range.","type":"number","nullable":true},"upper_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the upper bound.","default":"<"}},"type":"object","title":"NumberRangeFilter","description":"Represents a filter matching numeric values within the configured range."},"NumberSetFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"NUMBER_SET","title":"Type","default":"NUMBER_SET"},"members":{"items":{"anyOf":[{"type":"integer"},{"type":"number"},{"type":"string","pattern":"^(?!^[-+.]*$)[+-]?0*\\d*\\.?\\d*$"}]},"type":"array","uniqueItems":true,"title":"Members","description":"The numbers to match."}},"type":"object","required":["members"],"title":"NumberSetFilter","description":"Represents a filter matching numeric values in an immutable set."},"OAuthFlow":{"type":"string","enum":["AUTHORIZATION_CODE","CLIENT_CREDENTIALS","RESOURCE_OWNER","HYBRID","DEVICE_AUTHORIZATION","PKCE"],"title":"OAuthFlow","description":"Encapsulates identifying an OAuth authorization flow."},"Organization":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of the organization, UNIQUE"},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the organization, UNIQUE"},"description":{"title":"Description","description":"The description of the organization.","type":"string","nullable":true}},"type":"object","required":["code","name"],"title":"Organization","description":"Represents an organization that owns users and related domain data."},"OrganizationAccessCasePolicy":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true},"case_type_set_id":{"type":"string","format":"uuid","title":"Case Type Set Id","description":"The ID of the CaseTypeSet. FOREIGN KEY"},"case_type_set":{"description":"The CaseTypeSet","$ref":"#/components/schemas/CaseTypeSet","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the right is active"},"add_case":{"type":"boolean","title":"Add Case","description":"Whether cases may be added to the data collection"},"remove_case":{"type":"boolean","title":"Remove Case","description":"Whether cases may be removed from the data collection"},"add_case_set":{"type":"boolean","title":"Add Case Set","description":"Whether case sets may be added to the data collection"},"remove_case_set":{"type":"boolean","title":"Remove Case Set","description":"Whether case sets may be removed from the data collection"},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization","$ref":"#/components/schemas/Organization","nullable":true},"is_private":{"type":"boolean","title":"Is Private","description":"Whether the data collection is private, limited to the CaseTypes in the CaseTypeSet. When true, add/remove case and add/remove case set are considered (i) as the right to create/delete a case or case set in this data collection (setting case.created_in_data_collection to this data collection) and (ii) as the right to share the case or case set further in other data collections. Deleting a case or case set is only allowed when it can or has been removed from all other data collections as well."},"read_col_set_id":{"title":"Read Col Set Id","description":"The ID of the column set for which values can be read, limited to the CaseTypes in the CaseTypeSet. If empty, there are no read rights. FOREIGN KEY","type":"string","nullable":true},"read_col_set":{"description":"The column set with read access","$ref":"#/components/schemas/ColSet","nullable":true},"write_col_set_id":{"title":"Write Col Set Id","description":"The ID of the column set for which values can be updated, limited to the CaseTypes in the CaseTypeSet.  If empty, there are no write rights. FOREIGN KEY","type":"string","nullable":true},"write_col_set":{"description":"The column set with write access","$ref":"#/components/schemas/ColSet","nullable":true},"read_case_set":{"type":"boolean","title":"Read Case Set","description":"Whether case set be read, limited to the CaseTypes in the CaseTypeSet"},"write_case_set":{"type":"boolean","title":"Write Case Set","description":"Whether case set be updated, limited to the CaseTypes in the CaseTypeSet"}},"type":"object","required":["data_collection_id","case_type_set_id","is_active","add_case","remove_case","add_case_set","remove_case_set","organization_id","is_private","read_case_set","write_case_set"],"title":"OrganizationAccessCasePolicy","description":"Represents an organization's access rights in one data collection.\n\nIf an organization does not have a policy to a data collection, it has no\naccess rights to that data collection.\n\nThe access rights are limited to the CaseTypes in the CaseTypeSet. If a\nCaseType is not in the CaseTypeSet, the organization has no access\nrights to that data collection for that CaseType.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCasePolicy:\nRepresents common case and case-set rights for a case-type set."},"OrganizationAdminPolicy":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization","$ref":"#/components/schemas/Organization","nullable":true},"user_id":{"type":"string","format":"uuid","title":"User Id","description":"The ID of the user. FOREIGN KEY"},"user":{"description":"The user","$ref":"#/components/schemas/User","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the user is an admin for the organization"}},"type":"object","required":["organization_id","user_id","is_active"],"title":"OrganizationAdminPolicy","description":"Represents whether a user administers an organization.\n\nIf the user has the role ORG_ADMIN, they will be able to:\n1) Invite new users of this organization.\n2) Manage ABAC rights of these users.\n\nThe user will not be able to:\n1) Perform the operations above for any other organization for which there\n   is no corresponding admin policy.\n2) Set the ABAC rights for the organization itself.\n\nUsers with role APP_ADMIN or above do not require an admin policy to perform\nthese actions. They are de facto organization admin for all organizations.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nModel:\nRepresents an optional persistent identifier to commondb audit-aware models."},"OrganizationContacts":{"properties":{"organization":{"$ref":"#/components/schemas/Organization","description":"The organization corresponding to the contacts"},"sites":{"items":{"$ref":"#/components/schemas/Site"},"type":"array","title":"Sites","description":"The list of sites for the organization"},"contacts":{"items":{"$ref":"#/components/schemas/Contact"},"type":"array","title":"Contacts","description":"The list of contacts for the organization"}},"type":"object","required":["organization","sites","contacts"],"title":"OrganizationContacts","description":"Represents an organization with its sites and site-specific contacts."},"OrganizationIdentifierIssuerLink":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization corresponding to the ID","$ref":"#/components/schemas/Organization","nullable":true},"identifier_issuer_id":{"type":"string","format":"uuid","title":"Identifier Issuer Id","description":"The ID of the identifier issuer. FOREIGN KEY"},"identifier_issuer":{"description":"The identifier issuer corresponding to the ID","$ref":"#/components/schemas/IdentifierIssuer","nullable":true}},"type":"object","required":["organization_id","identifier_issuer_id"],"title":"OrganizationIdentifierIssuerLink","description":"Represents an organization with an identifier issuer it may use.\n\nServices can use these links to restrict identifier issuers available to users\nof a particular organization."},"OrganizationIdentifierIssuerUpdateAssociationRequestBody":{"properties":{"organization_identifier_issuer_links":{"items":{"$ref":"#/components/schemas/OrganizationIdentifierIssuerLink"},"type":"array","maxItems":10000,"title":"Organization Identifier Issuer Links"}},"type":"object","required":["organization_identifier_issuer_links"],"title":"OrganizationIdentifierIssuerUpdateAssociationRequestBody","description":"Represents a request to update the association between an Organization and\nIdentifierIssuers."},"OrganizationSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the organization set"},"description":{"title":"Description","description":"The description of the organization set.","type":"string","nullable":true}},"type":"object","required":["name"],"title":"OrganizationSet","description":"Represents a named, persisted collection of organizations."},"OrganizationSetMember":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"organization_set_id":{"type":"string","format":"uuid","title":"Organization Set Id","description":"The ID of the organization set. FOREIGN KEY"},"organization_set":{"description":"The organization set","$ref":"#/components/schemas/OrganizationSet","nullable":true},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization","$ref":"#/components/schemas/Organization","nullable":true}},"type":"object","required":["organization_set_id","organization_id"],"title":"OrganizationSetMember","description":"Represents one organization with a persisted organization set."},"OrganizationSetOrganizationUpdateAssociationRequestBody":{"properties":{"organization_set_members":{"items":{"$ref":"#/components/schemas/OrganizationSetMember"},"type":"array","maxItems":10000,"title":"Organization Set Members"}},"type":"object","required":["organization_set_members"],"title":"OrganizationSetOrganizationUpdateAssociationRequestBody","description":"Represents a request to update the association between an OrganizationSet and\nOrganizations.\n\nThis command manages the many-to-many relationship by creating or updating\nOrganizationSetMember associations between organization sets and\nindividual organizations."},"OrganizationShareCasePolicy":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true},"case_type_set_id":{"type":"string","format":"uuid","title":"Case Type Set Id","description":"The ID of the CaseTypeSet. FOREIGN KEY"},"case_type_set":{"description":"The CaseTypeSet","$ref":"#/components/schemas/CaseTypeSet","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the right is active"},"add_case":{"type":"boolean","title":"Add Case","description":"Whether cases may be added to the data collection"},"remove_case":{"type":"boolean","title":"Remove Case","description":"Whether cases may be removed from the data collection"},"add_case_set":{"type":"boolean","title":"Add Case Set","description":"Whether case sets may be added to the data collection"},"remove_case_set":{"type":"boolean","title":"Remove Case Set","description":"Whether case sets may be removed from the data collection"},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization","$ref":"#/components/schemas/Organization","nullable":true},"from_data_collection_id":{"type":"string","format":"uuid","title":"From Data Collection Id","description":"The ID of the data collection from which the CaseTypeSet is shared. FOREIGN KEY"},"from_data_collection":{"description":"The data collection from which the CaseTypeSet is shared","$ref":"#/components/schemas/DataCollection","nullable":true}},"type":"object","required":["data_collection_id","case_type_set_id","is_active","add_case","remove_case","add_case_set","remove_case_set","organization_id","from_data_collection_id"],"title":"OrganizationShareCasePolicy","description":"Represents an organization's additional source-to-target share rights.\n\nRights apply to the target ``data_collection_id`` when a case or case set is\nalready present in ``from_data_collection_id``.\n\nThe share rights are limited to the CaseTypes in the CaseTypeSet. If a\nCaseType is not in the CaseTypeSet, the organization has no share rights\nto that data collection for that CaseType.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCasePolicy:\nRepresents common case and case-set rights for a case-type set."},"Outage":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"description":{"title":"Description","description":"Description of the system outage.","type":"string","nullable":true},"active_from":{"title":"Active From","description":"The date-time when the system outage starts.","type":"string","nullable":true},"active_to":{"title":"Active To","description":"The date-time when the system outage ends.","type":"string","nullable":true},"visible_from":{"title":"Visible From","description":"The date-time when the system outage is announced.","type":"string","nullable":true},"visible_to":{"title":"Visible To","description":"The date-time when the system outage is no longer announced.","type":"string","nullable":true},"is_active":{"title":"Is Active","description":"Whether the system outage is currently active, this overrides active_from and active_to.","type":"boolean","nullable":true},"is_visible":{"title":"Is Visible","description":"Whether the system outage is currently visible, this overrides visible_from and visible_to.","type":"boolean","nullable":true}},"type":"object","title":"Outage","description":"Represents an active or scheduled system outage and its visibility window."},"PackageMetadata":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"name":{"type":"string","title":"Name","description":"Name of the package."},"version":{"type":"string","title":"Version","description":"Version of the package."},"license":{"title":"License","description":"License information for the package.","type":"string","nullable":true},"homepage":{"title":"Homepage","description":"Homepage URL of the package.","type":"string","nullable":true}},"type":"object","required":["name","version"],"title":"PackageMetadata","description":"Represents descriptive metadata for a package without persisting it."},"PartialDateRangeFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"PARTIAL_DATE_RANGE","title":"Type","default":"PARTIAL_DATE_RANGE"},"lower_bound":{"title":"Lower Bound","description":"The lower bound of the range.","type":"string","nullable":true},"lower_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the lower bound.","default":">="},"upper_bound":{"title":"Upper Bound","description":"The upper bound of the range.","type":"string","nullable":true},"upper_bound_censor":{"$ref":"#/components/schemas/ComparisonOperator","description":"The censor of the upper bound.","default":"<"}},"type":"object","title":"PartialDateRangeFilter","description":"Represents a filter matching partial dates within a configured range.\n\nModel validation:\nBound strings are expanded to their represented intervals before matching."},"PermissionType":{"type":"string","enum":["CREATE","READ","UPDATE","DELETE","EXECUTE"],"title":"PermissionType","description":"Encapsulates specifying the action authorized by a permission."},"PhylogeneticTree":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"tree_algorithm_id":{"title":"Tree Algorithm Id","description":"The ID of the tree algorithm. FOREIGN KEY","type":"string","nullable":true},"tree_algorithm":{"description":"The tree algorithm","$ref":"#/components/schemas/TreeAlgorithm","nullable":true},"tree_algorithm_code":{"$ref":"#/components/schemas/TreeAlgorithmType","description":"The tree algorithm"},"protocol_id":{"title":"Protocol Id","description":"The ID of the genetic distance protocol. FOREIGN KEY","type":"string","nullable":true},"protocol":{"description":"The genetic distance protocol","$ref":"#/components/schemas/GeneticDistanceProtocol","nullable":true},"leaf_ids":{"title":"Leaf Ids","description":"The list of unique identifiers of the leaves of the phylogenetic tree.","items":{"type":"string","format":"uuid"},"nullable":true},"profile_ids":{"title":"Profile Ids","description":"The list of unique identifiers of the profile of each leaf of the phylogenetic tree.","items":{"type":"string","format":"uuid"},"nullable":true},"newick_repr":{"type":"string","title":"Newick Repr","description":"The Newick representation of the phylogenetic tree."}},"type":"object","required":["tree_algorithm_code","newick_repr"],"title":"PhylogeneticTree","description":"Represents a non-persisted phylogenetic tree and its leaf metadata."},"Protocol":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"A unique code for the protocol, used for external reference."},"name":{"title":"Name","description":"The name of the protocol.","type":"string","nullable":true},"description":{"title":"Description","description":"A detailed description of the protocol","type":"string","nullable":true},"protocol_type":{"$ref":"#/components/schemas/ProtocolType","description":"The type of the protocol. Determines additional required fields."},"git_repository_uri":{"title":"Git Repository Uri","description":"URI of the Git repository containing the analytical logic for the protocol.","type":"string","nullable":true},"git_commit_hash":{"title":"Git Commit Hash","description":"The specific Git commit hash to ensure reproducibility of the protocol execution. Must be a 40-character hexadecimal string.","type":"string","nullable":true},"git_commit_tag":{"title":"Git Commit Tag","description":"An optional Git tag for easier reference to a specific version of the protocol.","type":"string","nullable":true},"valid_start_datetime":{"title":"Valid Start Datetime","description":"The UTC date and time from which the protocol is considered valid.","type":"string","nullable":true},"valid_end_datetime":{"title":"Valid End Datetime","description":"The UT C date and time until which the protocol is considered valid.","type":"string","nullable":true},"ref_seq_id":{"title":"Ref Seq Id","description":"The reference sequence used. FOREIGN KEY. Optional for protocols of type ASSEMBLY, SEQ_CLASSIFICATION, SEQ_DISTANCE, SEQ_PROFILE.","type":"string","nullable":true},"seq_category_set_id":{"title":"Seq Category Set Id","description":"The sequence category set used. FOREIGN KEY. Required for protocols of type SEQ_CLASSIFICATION.","type":"string","nullable":true},"locus_set_id":{"title":"Locus Set Id","description":"The locus set used. FOREIGN KEY. Optional for protocols of type PCR_MEASUREMENT, SEQ_CLASSIFICATION, SEQ_DISTANCE, SEQ_PROFILE.","type":"string","nullable":true},"seq_profile_type":{"description":"The type of sequence profile. Required for protocols of type SEQ_PROFILE.","$ref":"#/components/schemas/SeqProfileType","nullable":true},"seq_distance_type":{"description":"The type of sequence distance calculation used. Required for protocols of type SEQ_DISTANCE.","$ref":"#/components/schemas/SeqDistanceType","nullable":true},"is_integer_distance":{"title":"Is Integer Distance","description":"Whether the sequence distances are integers. Required for protocols of type SEQ_DISTANCE.","type":"boolean","nullable":true},"max_stored_distance":{"title":"Max Stored Distance","description":"The maximum sequence distance that is guaranteed to be stored. Required for protocols of type SEQ_DISTANCE.","type":"number","nullable":true},"props":{"additionalProperties":true,"type":"object","title":"Props","description":"A dictionary of additional properties specific to the protocol. Must be JSON-serializable. Can also be passed as a JSON string."}},"type":"object","required":["code","protocol_type"],"title":"Protocol","description":"Represents an analytical method used to derive a result from source data. The class\nis conceptually polymorphic, with the protocol_type field determining which\nadditional fields are required and which results it may be linked to. This design\nallows for a flexible and extensible representation of various analytical protocols\nwhile maintaining a single model for this type of reference data.\n\nThe Protocol model includes optional fields for linking to Git repositories and\ncommits, so that the exact analytical logic can be traced.\n\nModel validation: Datetimes are normalized to UTC, enum fields accept their\ninteger representations, Git references and JSON properties are validated, and\ntype-dependent fields must be supplied only for compatible protocol types.\n\nModel serialization: Enum fields are emitted as integer values and linked\nreference-sequence and locus-set identifiers are emitted as strings."},"ProtocolType":{"type":"integer","enum":[1,2,3,4,5,6,7,8,9],"title":"ProtocolType","description":"Encapsulates the laboratory or analytical purpose of a protocol.","x-enum-varnames":["PCR_MEASUREMENT","AST_MEASUREMENT","SEQUENCING","ASSEMBLY","TAXONOMY","SEQ_CLASSIFICATION","SEQ_PROFILE","SEQ_DISTANCE","AST_PREDICTION"]},"ReadSetForUpload":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The UUID of the case that the read set is associated with. If not available, the null ID is put.","default":"00000000-0000-0000-0000-000000000000"},"col_id":{"type":"string","format":"uuid","title":"Col Id","description":"The ID of the column with column type genetic reads that the read set is or will be associated with."},"sample_id":{"type":"string","format":"uuid","title":"Sample Id","description":"The UUID of the sample in seqdb that the read set is associated with. If not available, the null ID is put. Must be provided if other_sample_identifier is not provided.","default":"00000000-0000-0000-0000-000000000000"},"other_sample_identifier":{"description":"Another identifier of the sample in seqdb that the read set is associated with. If not available, None is put. Must be provided if sample_id is not provided.","$ref":"#/components/schemas/IdentifierForUpload","nullable":true},"protocol_id":{"type":"string","format":"uuid","title":"Protocol Id","description":"The UUID of the protocol, if available. If not available, the null ID is put. Must be present if protocol_code is not present. The use of protocol_id is preferred over protocol_code since the latter may change.","default":"00000000-0000-0000-0000-000000000000"},"protocol_code":{"title":"Protocol Code","description":"The code of the protocol. Must be present if protocol_id is not present. The use of protocol_code is meant for situations where the protocol_id is not known, but the code is and/or improves human interpretation.","type":"string","nullable":true}},"type":"object","required":["col_id"],"title":"ReadSetForUpload","description":"Represents a read set to upload and associate with a case and sample.\n\nA single read set is associated with both an existing case in\ncasedb and a potentially existing sample in seqdb.\n\nThe sample can be identified in seqdb either by its internal ID (sample_id) or\nby another identifier (other_sample_identifier). The ID of created read set is\nintended to be added to the corresponding case in casedb as the content of the\ngiven Col.\n\nModel validation: A sample ID or alternate sample identifier and a protocol ID\nor code must be provided. Missing pairs raise ``ValueError``."},"ReadsFileFormat":{"type":"integer","enum":[1],"title":"ReadsFileFormat","description":"Encapsulates supported read-file formats.","x-enum-varnames":["FASTQ"]},"RefCol":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"ref_dim_id":{"type":"string","format":"uuid","title":"Ref Dim Id","description":"The ID of the dimension. FOREIGN KEY"},"ref_dim":{"description":"The dimension","$ref":"#/components/schemas/RefDim","nullable":true},"code_suffix":{"title":"Code Suffix","description":"The code suffix for the column used to compose a full column code, if needed in addition to the dimension column code prefix. See code field.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code for the column, equal to the dimension column code prefix dot code_suffix (dot code_suffix only if the latter is not null). Numeric values are normalized to strings."},"rank":{"type":"integer","title":"Rank","description":"The rank of the column within the dimension, for (partial) ordering.","default":0},"label":{"title":"Label","description":"The label for the column, if different from the code.","type":"string","nullable":true},"col_type":{"$ref":"#/components/schemas/ColType","description":"The type of data stored in the column. String values are converted to ColType and serialized as strings."},"unit":{"description":"The unit of data stored in the column. String values are converted to Unit and serialized as strings; null remains null. Required when the column type is numeric or interval.","$ref":"#/components/schemas/Unit","nullable":true},"concept_set_id":{"title":"Concept Set Id","description":"The ID of the concept set for the column in case of type NOMINAL, ORDINAL, INTERVAL. FOREIGN KEY","type":"string","nullable":true},"concept_set":{"description":"The concept set.","$ref":"#/components/schemas/ConceptSet","nullable":true},"region_set_id":{"title":"Region Set Id","description":"The ID of the region set for the column in case of type GEO. FOREIGN KEY","type":"string","nullable":true},"region_set":{"description":"The region set.","$ref":"#/components/schemas/RegionSet","nullable":true},"genetic_distance_protocol_id":{"title":"Genetic Distance Protocol Id","description":"The ID of the genetic distance protocol that produces the input for the tree algorithm. FOREIGN KEY","type":"string","nullable":true},"genetic_distance_protocol":{"description":"The genetic distance protocol","$ref":"#/components/schemas/GeneticDistanceProtocol","nullable":true},"description":{"title":"Description","description":"Description of the column.","type":"string","nullable":true},"regex":{"title":"Regex","description":"The regular expression describing the concept set, in case of type REGULAR_EXPRESSION","type":"string","nullable":true},"schema_definition":{"title":"Schema Definition","description":"The definition of the schema describing the concept set, in case of type CONTEXT_FREE_GRAMMAR_XXX","type":"string","nullable":true},"schema_uri":{"title":"Schema Uri","description":"The URI to the schema describing the concept set, in case of type CONTEXT_FREE_GRAMMAR_XXX","type":"string","nullable":true},"props":{"additionalProperties":true,"type":"object","title":"Props","description":"Additional properties of the column."}},"type":"object","required":["ref_dim_id","code","col_type"],"title":"RefCol","description":"Represents a reusable column that is not linked to a specific CaseType.\n\nThe reference column promotes reuse and consistency. It belongs to a reference\ndimension and contains part of the information needed to define a case column,\nsuch as its code, type, and possible concept set.\n\nModel validation: The column type determines whether a unit, concept set,\nregion set, genetic-distance protocol, regular expression, or schema is required\nor prohibited. Schema-backed columns require exactly one schema source. Invalid\ncombinations raise ``InvalidArgumentsError``."},"RefColValidationRulesResponseBody":{"properties":{"valid_col_types_by_dim_type":{"additionalProperties":{"items":{"$ref":"#/components/schemas/ColType"},"type":"array","uniqueItems":true},"propertyNames":{"$ref":"#/components/schemas/DimType"},"type":"object","title":"Valid Col Types By Dim Type","description":"The RefCol.col_type values that are allowed depending on the RefCol.ref_dim.dim_type.","default":{"TEXT":["CONTEXT_FREE_GRAMMAR_JSON","NOMINAL","GENETIC_PROFILE","ORDINAL","GENETIC_READS","CONTEXT_FREE_GRAMMAR_XML","REGULAR_LANGUAGE","GENETIC_SEQUENCE","GENETIC_DISTANCE","INTERVAL","TEXT"],"IDENTIFIER":["ID_EVENT","ID_GENETIC_SEQUENCE","ID_PERSON","ID_CASE","ID_SAMPLE"],"NUMBER":["NOMINAL","DECIMAL_3","ORDINAL","DECIMAL_1","DECIMAL_2","DECIMAL_6","DECIMAL_5","INTERVAL","DECIMAL_0","DECIMAL_4"],"TIME":["TIME_DAY","TIME_QUARTER","TIME_WEEK","TIME_YEAR","TIME_MONTH"],"GEO":["GEO_LATLON","GEO_REGION"],"ORGANIZATION":["ORGANIZATION"],"OTHER":["CONTEXT_FREE_GRAMMAR_JSON","NOMINAL","GENETIC_PROFILE","OTHER","ORDINAL","GENETIC_READS","CONTEXT_FREE_GRAMMAR_XML","REGULAR_LANGUAGE","GENETIC_SEQUENCE","GENETIC_DISTANCE","INTERVAL","TEXT"]}}},"type":"object","title":"RefColValidationRulesResponseBody","description":"Represents additional validation rules for reference columns.\n\nModel serialization:\n    Dimension and column type enum values are serialized as strings, and\n    each set of valid column types is serialized as a list."},"RefDim":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"dim_type":{"$ref":"#/components/schemas/DimType","description":"The type of dimension. String values are converted to DimType and serialized as strings."},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code for the dimension, normalized to a string."},"label":{"type":"string","title":"Label","description":"The label for the dimension."},"rank":{"type":"integer","title":"Rank","description":"The rank of the dimension, for (partial) ordering.","default":0},"col_code_prefix":{"title":"Col Code Prefix","description":"The column code prefix used to compose a full column code, if different from the code field.","type":"string","nullable":true},"description":{"title":"Description","description":"Description of the dimension.","type":"string","nullable":true},"props":{"additionalProperties":true,"type":"object","title":"Props","description":"Additional properties of the dimension."}},"type":"object","required":["dim_type","code","label"],"title":"RefDim","description":"Represents a reusable dimension that is not linked to a specific CaseType.\n\nThe reference dimension promotes reuse and consistency. It groups reference\ncolumns that logically belong together and contains part of the information\nneeded to define a case dimension, such as its code and label."},"RegexFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"REGEX","title":"Type","default":"REGEX"},"pattern":{"type":"string","title":"Pattern","description":"The regular expression to match."}},"type":"object","required":["pattern"],"title":"RegexFilter","description":"Represents a filter matching values with a regular expression.\n\nModel validation:\nThe configured pattern must compile as a Python regular expression."},"Region":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"region_set_id":{"type":"string","format":"uuid","title":"Region Set Id","description":"The ID of the region set. FOREIGN KEY"},"region_set":{"description":"The region set to which the region belongs.","$ref":"#/components/schemas/RegionSet","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of the region."},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the region."},"centroid_lat":{"type":"number","title":"Centroid Lat","description":"The latitude of the region's centroid."},"centroid_lon":{"type":"number","title":"Centroid Lon","description":"The longitude of the region's centroid."},"center_lat":{"type":"number","title":"Center Lat","description":"The latitude of the region's center."},"center_lon":{"type":"number","title":"Center Lon","description":"The longitude of the region's center."}},"type":"object","required":["region_set_id","code","name","centroid_lat","centroid_lon","center_lat","center_lon"],"title":"Region","description":"Represents a named geographic region within a region set."},"RegionRelation":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"from_region_id":{"type":"string","format":"uuid","title":"From Region Id","description":"The ID of the source region. FOREIGN KEY"},"from_region":{"description":"The source region.","$ref":"#/components/schemas/Region","nullable":true},"to_region_id":{"type":"string","format":"uuid","title":"To Region Id","description":"The ID of the target region. FOREIGN KEY"},"to_region":{"description":"The target region.","$ref":"#/components/schemas/Region","nullable":true},"relation":{"$ref":"#/components/schemas/RegionRelationType","description":"The relation type. Accepts an enum member or its string value and is serialized as that string value."}},"type":"object","required":["from_region_id","to_region_id","relation"],"title":"RegionRelation","description":"Represents a directed geographic relation between two regions."},"RegionRelationType":{"type":"string","enum":["IS_SEPARATE_FROM","IS_ADJACENT_TO","OVERLAPS_WITH","CONTAINS"],"title":"RegionRelationType","description":"Identify spatial relationships between geographic regions."},"RegionSet":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of the region set."},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the region set."},"region_code_as_label":{"type":"boolean","title":"Region Code As Label","description":"Whether the region's code should be used as the label. E.g. in case of postal code the code could be used instead of the name of the region."},"resolution":{"type":"number","exclusiveMinimum":0.0,"title":"Resolution","description":"The geographic resolution; higher values indicate higher resolution."}},"type":"object","required":["code","name","region_code_as_label","resolution"],"title":"RegionSet","description":"Represents a geographically and temporally non-overlapping region set."},"RegionSetShape":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"region_set_id":{"type":"string","format":"uuid","title":"Region Set Id","description":"The ID of the region set. FOREIGN KEY"},"region_set":{"description":"The region set to which the region belongs.","$ref":"#/components/schemas/RegionSet","nullable":true},"scale":{"type":"number","title":"Scale","description":"The scale of the shape representation."},"geo_json":{"type":"string","title":"Geo Json","description":"The GeoJSON representation of the region set shape."}},"type":"object","required":["region_set_id","scale","geo_json"],"title":"RegionSetShape","description":"Represents a geographic shape for a region set at a given scale."},"RetrieveCaseCohortLinksByCaseTypeRequestBody":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID to retrieve pairs for."}},"type":"object","required":["case_type_id"],"title":"RetrieveCaseCohortLinksByCaseTypeRequestBody","description":"Represents a request to retrieve case-to-cohort links for a case type.\n\nThe request returns every case without pagination and is restricted to the\napplication administrator role."},"RetrieveCaseRightsRequestBody":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID to retrieve case access for."},"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"title":"Case Ids","description":"The Case IDs to retrieve access for. UNIQUE"}},"type":"object","required":["case_type_id","case_ids"],"title":"RetrieveCaseRightsRequestBody","description":"Represents a request to retrieve access rights to specified cases."},"RetrieveCaseSetStatsRequestBody":{"properties":{"case_set_ids":{"title":"Case Set Ids","description":"The case set IDs to retrieve stats for, if not all.","items":{"type":"string","format":"uuid"},"nullable":true},"datetime_range_filter":{"description":"The datetime range to filter cases by, if any. The key attribute of the filter should be left empty.","$ref":"#/components/schemas/DatetimeRangeFilter","nullable":true}},"type":"object","title":"RetrieveCaseSetStatsRequestBody","description":"Represents a request to retrieve statistics about case sets.\n\nOptional parameters further filter the cases considered for the statistics."},"RetrieveCaseTypeStatsRequestBody":{"properties":{"case_type_ids":{"title":"Case Type Ids","description":"The CaseType IDs to retrieve stats for, if not all.","items":{"type":"string","format":"uuid"},"nullable":true},"datetime_range_filter":{"description":"The datetime range to filter cases by, if any. The key attribute of the filter should be left empty.","$ref":"#/components/schemas/DatetimeRangeFilter","nullable":true}},"type":"object","title":"RetrieveCaseTypeStatsRequestBody","description":"Represents a request to retrieve statistics about case types.\n\nOptional parameters further filter the cases considered for the statistics."},"RetrieveCasesByIdRequestBody":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID to retrieve cases for."},"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"title":"Case Ids","description":"The case IDs to retrieve cases for. All cases must belong to the given CaseType. UNIQUE"}},"type":"object","required":["case_type_id","case_ids"],"title":"RetrieveCasesByIdRequestBody","description":"Represents a request to retrieve cases identified by unique IDs."},"RetrieveOrganizationContactsRequestBody":{"properties":{"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization to retrieve contacts for"}},"type":"object","required":["organization_id"],"title":"RetrieveOrganizationContactsRequestBody","description":"Represents a request to retrieve Contacts associated with organizations, sites, or specific contacts.\n\nExactly one of organization_ids, site_ids, or contact_ids must be provided.\nReturns a list of contacts with their associated site and organization data\ncascaded."},"RetrievePhylogeneticTreeRequestBody":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID that all the cases must belong to."},"genetic_distance_col_id":{"type":"string","format":"uuid","title":"Genetic Distance Col Id","description":"The ID of the genetic distance Col to use."},"tree_algorithm_code":{"$ref":"#/components/schemas/TreeAlgorithmType","description":"The algorithm to use for constructing the phylogenetic tree."},"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"title":"Case Ids","description":"The IDs of the cases to calculate the phylogenetic tree for."}},"type":"object","required":["case_type_id","genetic_distance_col_id","tree_algorithm_code","case_ids"],"title":"RetrievePhylogeneticTreeRequestBody","description":"Represents a request to calculate a phylogenetic tree from cases and genetic distances."},"RetrieveSimilarCasesRequestBody":{"properties":{"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID that all the cases must belong to."},"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"title":"Case Ids","description":"The IDs of cases to get the similar cases for."},"genetic_distance_col_id":{"type":"string","format":"uuid","title":"Genetic Distance Col Id","description":"The Col ID to use for determining the genetic distance between cases."},"max_distance":{"type":"number","minimum":0.0,"title":"Max Distance","description":"The maximum genetic distance for cases to be considered similar."}},"type":"object","required":["case_type_id","case_ids","genetic_distance_col_id","max_distance"],"title":"RetrieveSimilarCasesRequestBody","description":"Represents a request to retrieve genetically similar cases.\n\nSimilarity is based on a genetic-distance column and a maximum distance\nthreshold applied to the supplied case IDs."},"RetrieveSimilarCasesResponseBody":{"properties":{"cases":{"items":{"$ref":"#/components/schemas/SimilarCase"},"type":"array","title":"Cases","description":"The similar cases that were found, limited to their IDs and case dates."}},"type":"object","required":["cases"],"title":"RetrieveSimilarCasesResponseBody","description":"Represents the cases returned by a similar-case request."},"SeqDistanceType":{"type":"integer","enum":[1,2,3,4,5],"title":"SeqDistanceType","description":"Encapsulates supported algorithms for calculating profile distances.","x-enum-varnames":["SNP_HAMMING","ALLELE_HAMMING","MLVA_HAMMING","MLVA_EUCLIDEAN","KMER_EUCLIDEAN"]},"SeqFileFormat":{"type":"integer","enum":[2],"title":"SeqFileFormat","description":"Encapsulates supported assembled-sequence file formats.","x-enum-varnames":["FASTA"]},"SeqForUpload":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"case_id":{"type":"string","format":"uuid","title":"Case Id","description":"The UUID of the case that the sequence is associated with. If not available, the null ID is put.","default":"00000000-0000-0000-0000-000000000000"},"col_id":{"type":"string","format":"uuid","title":"Col Id","description":"The ID of the column that the sequence is or will be associated with."},"sample_id":{"type":"string","format":"uuid","title":"Sample Id","description":"The UUID of the sample in seqdb that the sequence is associated with. If not available, the null ID is put. Must be provided if other_sample_identifier is not provided.","default":"00000000-0000-0000-0000-000000000000"},"other_sample_identifier":{"description":"Another identifier of the sample in seqdb that the sequence is associated with. If not available, None is put. Must be provided if sample_id is not provided.","$ref":"#/components/schemas/IdentifierForUpload","nullable":true},"protocol_id":{"type":"string","format":"uuid","title":"Protocol Id","description":"The UUID of the protocol, if available. If not available, the null ID is put. Must be present if protocol_code is not present. The use of protocol_id is preferred over protocol_code since the latter may change.","default":"00000000-0000-0000-0000-000000000000"},"protocol_code":{"title":"Protocol Code","description":"The code of the protocol. Must be present if protocol_id is not present. The use of protocol_code is meant for situations where the protocol_id is not known, but the code is and/or improves human interpretation.","type":"string","nullable":true}},"type":"object","required":["col_id"],"title":"SeqForUpload","description":"Represents a sequence to upload and associate with a case and sample.\n\nA single sequence is associated with both an existing case in\ncasedb and a potentially existing sample in seqdb.\n\nThe sample can be identified in seqdb either by its internal ID (sample_id) or\nby another identifier (other_sample_identifier). The ID of created sequence is\nintended to be added to the corresponding case in casedb as the content of the\ngiven Col.\n\nModel validation: A sample ID or alternate sample identifier and a protocol ID\nor code must be provided. Missing pairs raise ``ValueError``."},"SeqProfileType":{"type":"integer","enum":[1,2,3,4,5],"title":"SeqProfileType","description":"Encapsulates the biological representation used by a sequence profile.","x-enum-varnames":["SNP","LOCUS","ALLELE","MLVA","KMER"]},"SimilarCase":{"properties":{"id":{"type":"string","format":"uuid","title":"Id","description":"The case ID."},"timed_at":{"type":"string","format":"date-time","title":"Timed At","description":"The case date, if any."}},"type":"object","required":["id","timed_at"],"title":"SimilarCase","description":"Represents a similar-case result with its identifier and date."},"Site":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization. FOREIGN KEY"},"organization":{"description":"The organization corresponding to the ID","$ref":"#/components/schemas/Organization","nullable":true},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of an organization, UNIQUE"}},"type":"object","required":["organization_id","name"],"title":"Site","description":"Represents a physical site belonging to an organization."},"StringSetFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"STRING_SET","title":"Type","default":"STRING_SET"},"members":{"items":{"type":"string"},"type":"array","uniqueItems":true,"title":"Members","description":"The strings to match."},"case_sensitive":{"type":"boolean","title":"Case Sensitive","description":"Whether the match is case sensitive.","default":false}},"type":"object","required":["members"],"title":"StringSetFilter","description":"Represents a filter matching strings with optional case sensitivity.\n\nModel validation:\nCase-insensitive members and matched enum names are normalized to lowercase\nbefore membership is evaluated."},"TreeAlgorithm":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"tree_algorithm_class_id":{"type":"string","format":"uuid","title":"Tree Algorithm Class Id","description":"The ID of the tree algorithm class. FOREIGN KEY"},"tree_algorithm_class":{"description":"The class of algorithm","$ref":"#/components/schemas/TreeAlgorithmClass","nullable":true},"seqdb_tree_algorithm_id":{"type":"string","format":"uuid","title":"Seqdb Tree Algorithm Id","description":"The ID of the tree algorithm in seqdb"},"code":{"$ref":"#/components/schemas/TreeAlgorithmType","description":"The code of the tree algorithm. String values are converted to TreeAlgorithmType and serialized as strings."},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the tree algorithm"},"description":{"title":"Description","description":"The description of the tree algorithm","type":"string","nullable":true},"is_ultrametric":{"type":"boolean","title":"Is Ultrametric","description":"Whether the tree is ultrametric"},"rank":{"title":"Rank","description":"The rank of the tree algorithm, if relevant.","type":"integer","nullable":true}},"type":"object","required":["tree_algorithm_class_id","seqdb_tree_algorithm_id","code","name","is_ultrametric"],"title":"TreeAlgorithm","description":"Represents an algorithm used to construct a tree.\n\nSee https://en.wikipedia.org/wiki/Hierarchical_clustering,\nhttps://en.wikipedia.org/wiki/Neighbor_joining,\n https://en.wikipedia.org/wiki/Computational_phylogenetics,\n https://en.wikipedia.org/wiki/Spanning_tree"},"TreeAlgorithmClass":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"code":{"type":"string","maxLength":255,"title":"Code","description":"The code of the tree algorithm class"},"name":{"type":"string","maxLength":255,"title":"Name","description":"The name of the tree algorithm class"},"is_seq_based":{"type":"boolean","title":"Is Seq Based","description":"Whether the sequence or alignment is needed as input"},"is_dist_based":{"type":"boolean","title":"Is Dist Based","description":"Whether the distance between sequences is needed as input"},"rank":{"title":"Rank","description":"The rank of the tree algorithm class, if relevant.","type":"integer","nullable":true}},"type":"object","required":["code","name","is_seq_based","is_dist_based"],"title":"TreeAlgorithmClass","description":"Represents a category of algorithms used to construct trees."},"TreeAlgorithmType":{"type":"string","enum":["SLINK","CLINK","UPGMA","WPGMA","UPGMC","WPGMC","VERSATILE","MISSQ","MNSSQ","MIVAR","MNVAR","MINI_MAX","HAUSDORFF","MIN_SUM_MEDOID","MIN_SUM_INCREASE_MEDOID","MEDOID","MIN_ENERGY","FITCH_MARGOLIASH","MAX_PARSIMONY","ML","BAYESIAN_INFERENCE","MIN_SPANNING","NJ"],"title":"TreeAlgorithmType","description":"Define supported phylogenetic-tree and clustering algorithms."},"Unit":{"type":"string","enum":["SECOND","MINUTE","HOUR","DAY","WEEK","MONTH","QUARTER","YEAR","BASE_PAIR","DOSE","OTHER"],"title":"Unit","description":"Identify units supported by casedb column and concept metadata."},"UpdateCaseCreatedInDataCollectionRequestBody":{"properties":{"case_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":10000,"title":"Case Ids","description":"The IDs of the cases to update."},"target_created_in_data_collection_id":{"type":"string","format":"uuid","title":"Target Created In Data Collection Id","description":"The ID of the data collection to assign to the cases as created_in_data_collection_id."}},"type":"object","required":["case_ids","target_created_in_data_collection_id"],"title":"UpdateCaseCreatedInDataCollectionRequestBody","description":"Represents a request to assign a different created_in_data_collection_id to a list of cases."},"UpdateUserOwnOrganizationRequestBody":{"properties":{"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization of the user. FOREIGN KEY"}},"type":"object","required":["organization_id"],"title":"UpdateUserOwnOrganizationRequestBody","description":"Represents a request to update the current user's Organization membership.\n\nThis command allows a user to change their own organization association.\nThe is_new_user flag indicates whether this is part of a new user\nregistration process."},"UpdateUserRequestBody":{"properties":{"is_active":{"title":"Is Active","description":"The updated active status of the user. Not updated if not provided.","type":"boolean","nullable":true},"roles":{"title":"Roles","description":"The updated set of roles of the user. Not updated if not provided. If provided, should have at least one element.","items":{"type":"string"},"nullable":true},"organization_id":{"title":"Organization Id","description":"The updated organization ID of the user. Not updated if not provided.","type":"string","nullable":true}},"type":"object","required":["is_active","roles","organization_id"],"title":"UpdateUserRequestBody","description":"Represents a request to update an existing User's status, roles, and organization membership.\n\nThe target user is identified by tgt_user_id. Any field set to None will\nleave that property unchanged. Roles cannot be set to an empty set.\nCache is invalidated after successful update."},"UploadAction":{"type":"string","enum":["ERROR","UPDATE","CREATE","SKIP"],"title":"UploadAction","description":"Encapsulates the action selected for one record during an upload."},"UploadCasesCommand":{"properties":{"verify_only":{"type":"boolean","title":"Verify Only","description":"If true, the upload is only verified but not actually performed.","default":false},"on_exists":{"$ref":"#/components/schemas/UploadAction","description":"Action to take if one of the entities in the batch already exists upon upload.","default":"ERROR"},"on_new":{"$ref":"#/components/schemas/UploadAction","description":"Action to take if one of the entities in the batch is new upon upload.","default":"CREATE"},"id":{"type":"string","format":"uuid","title":"Id","description":"The ID of the command"},"user":{"$ref":"#/components/schemas/User","nullable":true},"created_at":{"type":"string","format":"date-time","title":"Created At","description":"Command creation timestamp, serialized as an ISO 8601 value."},"props":{"additionalProperties":true,"type":"object","title":"Props","description":"Command properties; callable entries are omitted from serialization.","default":{}},"case_type_id":{"type":"string","format":"uuid","title":"Case Type Id","description":"The CaseType ID that all the cases must belong to. All cases in the case set must have this CaseType ID."},"default_created_in_data_collection_id":{"type":"string","format":"uuid","title":"Default Created In Data Collection Id","description":"The default data collection to associate with the cases if not specified at the case level AND the case does not exist yet.","default":"00000000-0000-0000-0000-000000000000"},"case_batch":{"$ref":"#/components/schemas/CaseBatchForUpload","description":"The unique cases to validate."}},"type":"object","required":["case_type_id","case_batch"],"title":"UploadCasesCommand","description":"Represents a request to perform an atomic batch upload of cases and associated data.\n\nThe upload returns an upload result. Setting ``verify_only`` stops processing\nafter verification, so the result contains only verification outcomes.\n\nThe data are uploaded as a single atomic unit of work, so that\neither all data are successfully uploaded or none are.\n\nModel validation:\n    Every supplied case must belong to the command's case type. A mismatched\n    case causes validation to fail."},"UploadResult":{"properties":{"logs":{"items":{"$ref":"#/components/schemas/EtlLogItem"},"type":"array","title":"Logs","description":"Log items capturing messages and events that occurred during the operation."},"id":{"title":"Id","description":"The unique identifier for the specific object instance that this result pertains to, if applicable. E.g. the object that was created or updated as part of the upload.","type":"string","nullable":true},"status":{"$ref":"#/components/schemas/EtlStatus","description":"Upload status; successful states require no error logs and failed states require an error log.","default":"PENDING"},"is_new":{"type":"boolean","title":"Is New","description":"Indicates whether the object did not exist before start of the upload. False in case upload failed before this could be determined.","default":false}},"type":"object","title":"UploadResult","description":"Represents the result of an upload operation for one object.\n\nIt includes upload status and logs.\n\nModel validation:\n- If the status is successful (NOT_FAILED), there must be no error log items.\n- If the status is failed, there must be at least one error log item.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseResult:\nRepresents accumulated ETL messages with severity-specific queries.\n\nPydantic subclasses declare their status field and override\n:meth:`set_error_status` to mark an error after :meth:`add_error` appends\nan ERROR-severity event.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nModel:\nRepresents a domain model in an application. Models are used to represent the\nstate of the application and are often persisted in a database. Models can also\nbe used to represent the state of the application in memory, e.g. for caching or\nfor passing data between services. Models can be immutable or mutable, depending on\nthe use case.\n\nEach model must have an associated Entity, which defines the metadata for the\nmodel. See the Entity class for more details. The Entity must be set in the\nsubclass of Model. Analogously, a unique name for the model can be set in the\nsubclass, which can be used for identification and logging purposes.\n\nThe model_entity and model_name class methods can be used to retrieve the Entity\nand name of the model, respectively. These methods have the same \"model_\" prefix as\ngeneric Pydantic models to avoid name conflicts with other.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseModel:\n!!! abstract \"Usage Documentation\"\n    [Models](../concepts/models.md)\n\nA base class for creating Pydantic models.\n\nAttributes:\n    __class_vars__: The names of the class variables defined on the model.\n    __private_attributes__: Metadata about the private attributes of the model.\n    __signature__: The synthesized `__init__` [`Signature`][inspect.Signature] of the model.\n\n    __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.\n    __pydantic_core_schema__: The core schema of the model.\n    __pydantic_custom_init__: Whether the model has a custom `__init__` function.\n    __pydantic_decorators__: Metadata containing the decorators defined on the model.\n        This replaces `Model.__validators__` and `Model.__root_validators__` from Pydantic V1.\n    __pydantic_generic_metadata__: A dictionary containing metadata about generic Pydantic models.\n        The `origin` and `args` items map to the [`__origin__`][genericalias.__origin__]\n        and [`__args__`][genericalias.__args__] attributes of [generic aliases][types-genericalias],\n        and the `parameter` item maps to the `__parameter__` attribute of generic classes.\n    __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.\n    __pydantic_post_init__: The name of the post-init method for the model, if defined.\n    __pydantic_root_model__: Whether the model is a [`RootModel`][pydantic.root_model.RootModel].\n    __pydantic_serializer__: The `pydantic-core` `SchemaSerializer` used to dump instances of the model.\n    __pydantic_validator__: The `pydantic-core` `SchemaValidator` used to validate instances of the model.\n\n    __pydantic_fields__: A dictionary of field names and their corresponding [`FieldInfo`][pydantic.fields.FieldInfo] objects.\n    __pydantic_computed_fields__: A dictionary of computed field names and their corresponding [`ComputedFieldInfo`][pydantic.fields.ComputedFieldInfo] objects.\n\n    __pydantic_extra__: A dictionary containing extra values, if [`extra`][pydantic.config.ConfigDict.extra]\n        is set to `'allow'`.\n    __pydantic_fields_set__: The names of fields explicitly set during instantiation.\n    __pydantic_private__: Values of private attributes set on the model instance."},"User":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The ID of the user","type":"string","nullable":true},"key":{"title":"Key","description":"Unique user key, normalized to lowercase.","type":"string","nullable":true},"email":{"title":"Email","description":"The email of the user","type":"string","nullable":true},"name":{"title":"Name","description":"The full name of the user","type":"string","nullable":true},"description":{"title":"Description","description":"The description of the user.","type":"string","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the user is active or not. An inactive user cannot perform any actions that require authorization.","default":true},"roles":{"items":{"type":"string"},"type":"array","maxItems":255,"minItems":1,"uniqueItems":true,"title":"Roles","description":"User roles, accepting a set, list, or JSON list string and serializing as a list."},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization of the user. FOREIGN KEY"},"organization":{"description":"The organization of the user","$ref":"#/components/schemas/Organization","nullable":true}},"type":"object","required":["roles","organization_id"],"title":"User","description":"Represents an authenticated commondb user and their organization membership.\n\nThe user key is stored lower case for unique lookup. Inactive users retain\ntheir data but cannot perform operations that require authorization."},"UserAccessCasePolicy":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true},"case_type_set_id":{"type":"string","format":"uuid","title":"Case Type Set Id","description":"The ID of the CaseTypeSet. FOREIGN KEY"},"case_type_set":{"description":"The CaseTypeSet","$ref":"#/components/schemas/CaseTypeSet","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the right is active"},"add_case":{"type":"boolean","title":"Add Case","description":"Whether cases may be added to the data collection"},"remove_case":{"type":"boolean","title":"Remove Case","description":"Whether cases may be removed from the data collection"},"add_case_set":{"type":"boolean","title":"Add Case Set","description":"Whether case sets may be added to the data collection"},"remove_case_set":{"type":"boolean","title":"Remove Case Set","description":"Whether case sets may be removed from the data collection"},"user_id":{"type":"string","format":"uuid","title":"User Id","description":"The ID of the user. FOREIGN KEY"},"user":{"description":"The user","$ref":"#/components/schemas/User","nullable":true},"read_col_set_id":{"title":"Read Col Set Id","description":"The ID of the column set for which values can be read, limited to the CaseTypes in the CaseTypeSet.  If empty, there are no read rights. FOREIGN KEY","type":"string","nullable":true},"read_col_set":{"description":"The column set with read access","$ref":"#/components/schemas/ColSet","nullable":true},"write_col_set_id":{"title":"Write Col Set Id","description":"The ID of the column set for which values can be updated, limited to the CaseTypes in the CaseTypeSet.  If empty, there are no write rights. FOREIGN KEY","type":"string","nullable":true},"write_col_set":{"description":"The column set with write access","$ref":"#/components/schemas/ColSet","nullable":true},"read_case_set":{"type":"boolean","title":"Read Case Set","description":"Whether case set be read, limited to the CaseTypes in the CaseTypeSet"},"write_case_set":{"type":"boolean","title":"Write Case Set","description":"Whether case set be updated, limited to the CaseTypes in the CaseTypeSet"}},"type":"object","required":["data_collection_id","case_type_set_id","is_active","add_case","remove_case","add_case_set","remove_case_set","user_id","read_case_set","write_case_set"],"title":"UserAccessCasePolicy","description":"Represents a user's maximum access rights in one data collection.\n\nThe rights are\nanalogous to the organization access case policy.\n\nThe actual access rights of a user are derived as the intersection of their\nmaximum access rights stored here, and the access rights of the organization\nto which they belong.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCasePolicy:\nRepresents common case and case-set rights for a case-type set."},"UserInvitation":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"key":{"title":"Key","description":"Unique user key; an empty value is normalized to omitted.","type":"string","nullable":true},"email":{"title":"Email","description":"The email of the user","type":"string","nullable":true},"name":{"title":"Name","description":"The full name of the user","type":"string","nullable":true},"description":{"title":"Description","description":"The description of the user.","type":"string","nullable":true},"token":{"type":"string","maxLength":255,"title":"Token","description":"The token of the invitation"},"expires_at":{"type":"string","format":"date-time","title":"Expires At","description":"The expiry date of the invitation"},"roles":{"items":{"type":"string"},"type":"array","maxItems":255,"minItems":1,"uniqueItems":true,"title":"Roles","description":"Initial roles, accepting a set, list, or JSON list string and serializing as a list."},"invited_by_user_id":{"type":"string","format":"uuid","title":"Invited By User Id","description":"The ID of the user who invited the new user. FOREIGN KEY"},"invited_by_user":{"description":"The user who invited the new user","$ref":"#/components/schemas/User","nullable":true},"organization_id":{"type":"string","format":"uuid","title":"Organization Id","description":"The ID of the organization that the new user will belong to. FOREIGN KEY"},"organization":{"description":"The organization that the new user will belong to","$ref":"#/components/schemas/Organization","nullable":true}},"type":"object","required":["token","expires_at","roles","invited_by_user_id","organization_id"],"title":"UserInvitation","description":"Represents an expiring invitation with a user's initial organization and roles."},"UserInvitationConstraints":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"roles":{"items":{"type":"string"},"type":"array","maxItems":255,"uniqueItems":true,"title":"Roles","description":"The roles that the user may be assigned by the inviting user."},"organization_ids":{"items":{"type":"string","format":"uuid"},"type":"array","maxItems":1000000,"uniqueItems":true,"title":"Organization Ids","description":"The organizations that the user may be assigned by the inviting user."}},"type":"object","required":["roles","organization_ids"],"title":"UserInvitationConstraints","description":"Represents constraints on roles and organizations an inviting user may assign."},"UserNameEmail":{"properties":{"id":{"title":"Id","description":"The ID of the user","type":"string","nullable":true},"name":{"title":"Name","description":"The full name of the user","type":"string","nullable":true},"email":{"title":"Email","description":"The email of the user","type":"string","nullable":true}},"type":"object","required":["email"],"title":"UserNameEmail","description":"Represents a non-persisted user identity for display and lookup responses."},"UserShareCasePolicy":{"properties":{"created_at":{"title":"Created At","description":"The UTC datetime when the object was created.","type":"string","nullable":true},"modified_at":{"title":"Modified At","description":"The UTC datetime when the object was last modified.","type":"string","nullable":true},"modified_by":{"title":"Modified By","description":"The ID of the user who last modified the object.","type":"string","nullable":true},"id":{"title":"Id","description":"The unique identifier for the object.","type":"string","nullable":true},"data_collection_id":{"type":"string","format":"uuid","title":"Data Collection Id","description":"The ID of the data collection. FOREIGN KEY"},"data_collection":{"description":"The data collection","$ref":"#/components/schemas/DataCollection","nullable":true},"case_type_set_id":{"type":"string","format":"uuid","title":"Case Type Set Id","description":"The ID of the CaseTypeSet. FOREIGN KEY"},"case_type_set":{"description":"The CaseTypeSet","$ref":"#/components/schemas/CaseTypeSet","nullable":true},"is_active":{"type":"boolean","title":"Is Active","description":"Whether the right is active"},"add_case":{"type":"boolean","title":"Add Case","description":"Whether cases may be added to the data collection"},"remove_case":{"type":"boolean","title":"Remove Case","description":"Whether cases may be removed from the data collection"},"add_case_set":{"type":"boolean","title":"Add Case Set","description":"Whether case sets may be added to the data collection"},"remove_case_set":{"type":"boolean","title":"Remove Case Set","description":"Whether case sets may be removed from the data collection"},"user_id":{"type":"string","format":"uuid","title":"User Id","description":"The ID of the user. FOREIGN KEY"},"user":{"description":"The user","$ref":"#/components/schemas/User","nullable":true},"from_data_collection_id":{"type":"string","format":"uuid","title":"From Data Collection Id","description":"The ID of the data collection from which the CaseTypeSet is shared. FOREIGN KEY"},"from_data_collection":{"description":"The data collection from which the CaseTypeSet is shared","$ref":"#/components/schemas/DataCollection","nullable":true}},"type":"object","required":["data_collection_id","case_type_set_id","is_active","add_case","remove_case","add_case_set","remove_case_set","user_id","from_data_collection_id"],"title":"UserShareCasePolicy","description":"Represents a user's maximum source-to-target share rights.\n\nThe rights are\nanalogous to the organization share case policy.\n\nThe actual share rights of a user are derived as the intersection of their\nmaximum share rights stored here, and the share rights of the organization\nto which they belong.\n\n\n\nPARENT CLASS DOCUMENTATION\n\n\nBaseCasePolicy:\nRepresents common case and case-set rights for a case-type set."},"UuidSetFilter":{"properties":{"invert":{"type":"boolean","title":"Invert","description":"Whether to invert the filter.","default":false},"key":{"type":"string","title":"Key","description":"The column key to apply the filter to, when applied to a row. If None, the filter cannot be applied to a row, only to a column."},"type":{"type":"string","const":"UUID_SET","title":"Type","default":"UUID_SET"},"members":{"items":{"type":"string","format":"uuid"},"type":"array","uniqueItems":true,"title":"Members","description":"The UUIDs to match."}},"type":"object","required":["members"],"title":"UuidSetFilter","description":"Represents a filter matching UUID values in an immutable set.\n\nModel validation:\nInitializes a direct UUID membership matcher."},"ValidationError":{"properties":{"loc":{"items":{"anyOf":[{"type":"string"},{"type":"integer"}]},"type":"array","title":"Location"},"msg":{"type":"string","title":"Message"},"type":{"type":"string","title":"Error Type"},"input":{"title":"Input"},"ctx":{"type":"object","title":"Context"}},"type":"object","required":["loc","msg","type"],"title":"ValidationError"}},"securitySchemes":{"https://pre-login.rivm.nl/broker/sp/oidc":{"type":"http","scheme":"bearer","model":{"type":"oauth2","flows":{"authorizationCode":{"scopes":{"openid":"openid","profile":"profile","email":"email"},"authorizationUrl":"https://pre-login.rivm.nl/broker/sp/oidc/authenticate","tokenUrl":"https://pre-login.rivm.nl/broker/sp/oidc/token"}}},"scheme_name":"OAuth2","auto_error":true,"x-tokenName":"id_token"},"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/v2.0":{"type":"http","scheme":"bearer","model":{"type":"oauth2","flows":{"authorizationCode":{"scopes":{},"authorizationUrl":"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/oauth2/v2.0/authorize","tokenUrl":"https://login.microsoftonline.com/cd8466c6-d7ce-410a-be13-33e40185fdab/oauth2/v2.0/token"}}},"scheme_name":"OAuth2","auto_error":true,"x-tokenName":"id_token"}}}}